Hb_007218_040

Information

Type -
Description -
Location Contig7218: 69239-74222
Sequence    

Annotation

kegg
ID tcc:TCM_028924
description Leucine-rich repeat transmembrane protein kinase protein, putative
nr
ID XP_007024354.1
description Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
swissprot
ID O65924
description Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1
trembl
ID A0A061GBL2
description Leucine-rich repeat transmembrane protein kinase protein, putative OS=Theobroma cacao GN=TCM_028924 PE=3 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat transmembrane protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55668: 11126-72132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_040 0.0 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
2 Hb_001140_300 0.0736425336 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
3 Hb_001396_030 0.0744045794 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
4 Hb_000112_080 0.0772908589 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
5 Hb_168918_010 0.079277172 - - pectin acetylesterase, putative [Ricinus communis]
6 Hb_007811_020 0.0811083555 - - PREDICTED: expansin-A6 [Jatropha curcas]
7 Hb_004435_020 0.0816585111 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
8 Hb_000418_110 0.0846922025 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_039222_010 0.0862717235 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
10 Hb_001514_030 0.0863885217 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
11 Hb_005181_170 0.086732184 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
12 Hb_001056_040 0.0883677767 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
13 Hb_003894_110 0.091679216 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
14 Hb_001007_020 0.0935043871 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
15 Hb_015048_020 0.094111364 - - PREDICTED: myb-like protein D [Jatropha curcas]
16 Hb_000392_110 0.0942959809 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_085962_010 0.0957323933 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
18 Hb_000009_270 0.0993987183 - - Calmodulin, putative [Ricinus communis]
19 Hb_001047_090 0.0995573181 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
20 Hb_111985_100 0.1003863564 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007218_040 Hb_007218_040 Hb_001140_300 Hb_001140_300 Hb_007218_040--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_025787_020 Hb_025787_020 Hb_001140_300--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_001140_300--Hb_001056_040 Hb_007632_070 Hb_007632_070 Hb_001140_300--Hb_007632_070 Hb_005181_170 Hb_005181_170 Hb_001140_300--Hb_005181_170 Hb_001140_300--Hb_001396_030 Hb_085962_010 Hb_085962_010 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_001396_030--Hb_000112_080 Hb_000303_060 Hb_000303_060 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_000112_080--Hb_005181_170 Hb_015048_020 Hb_015048_020 Hb_000112_080--Hb_015048_020 Hb_000112_080--Hb_001140_300 Hb_000003_750 Hb_000003_750 Hb_000112_080--Hb_000003_750 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_004122_010 Hb_004122_010 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_001541_130 Hb_001541_130 Hb_007811_020--Hb_001541_130 Hb_004435_020--Hb_000878_050 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140352 0.117943 1.91513 2.50325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.228679 1.12069

CAGE analysis