Hb_085962_010

Information

Type -
Description -
Location Contig85962: 562-1140
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11380g
description hypothetical protein
nr
ID XP_006373303.1
description hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
swissprot
ID Q9LXV0
description UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana GN=UGT92A1 PE=2 SV=1
trembl
ID U5FJE6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11380g PE=3 SV=1
Gene Ontology
ID GO:0047213
description udp-glycosyltransferase 92a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085962_010 0.0 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
2 Hb_001396_030 0.0443227352 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
3 Hb_027506_030 0.0456150474 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_000303_060 0.0684570382 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_004804_010 0.0777928064 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
6 Hb_010264_020 0.0828809776 - - unnamed protein product [Vitis vinifera]
7 Hb_002272_120 0.0846101694 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_032572_010 0.0911156274 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
9 Hb_001140_300 0.0926177211 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
10 Hb_005542_120 0.0935611169 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
11 Hb_000112_080 0.0949805835 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
12 Hb_007218_040 0.0957323933 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
13 Hb_007811_020 0.09921469 - - PREDICTED: expansin-A6 [Jatropha curcas]
14 Hb_011918_070 0.1018084892 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
15 Hb_010962_020 0.102217791 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
16 Hb_001541_130 0.1024343158 - - GDSL esterase/lipase [Morus notabilis]
17 Hb_006846_040 0.1029923977 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
18 Hb_138585_010 0.1036574662 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
19 Hb_111985_100 0.1067803289 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_006788_110 0.1069598467 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_085962_010 Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_085962_010--Hb_001396_030 Hb_027506_030 Hb_027506_030 Hb_085962_010--Hb_027506_030 Hb_000303_060 Hb_000303_060 Hb_085962_010--Hb_000303_060 Hb_004804_010 Hb_004804_010 Hb_085962_010--Hb_004804_010 Hb_010264_020 Hb_010264_020 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_001396_030--Hb_027506_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_027506_030--Hb_004804_010 Hb_027506_030--Hb_010264_020 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_000303_060--Hb_010264_020 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_000303_060--Hb_004804_010 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_010264_020--Hb_032572_010 Hb_010264_020--Hb_001396_030 Hb_002272_120--Hb_001396_030 Hb_000735_020 Hb_000735_020 Hb_002272_120--Hb_000735_020 Hb_002272_120--Hb_027506_030 Hb_011918_070 Hb_011918_070 Hb_002272_120--Hb_011918_070 Hb_006788_110 Hb_006788_110 Hb_002272_120--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.89143 42.4783 77.7169 0 0.282591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.9065 38.007

CAGE analysis