Hb_012395_060

Information

Type -
Description -
Location Contig12395: 15112-29064
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07750g
description POPTRDRAFT_229877; hypothetical protein
nr
ID XP_012069897.1
description PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
swissprot
ID F4IVU1
description Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1
trembl
ID B9HSS9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07750g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07256: 15484-15918 , PASA_asmbl_07257: 19877-20390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_060 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
2 Hb_169077_030 0.0696495487 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
3 Hb_004804_010 0.0801021596 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
4 Hb_001269_660 0.0834088906 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
5 Hb_001534_140 0.0863319594 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
6 Hb_138585_010 0.0912781157 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
7 Hb_000152_570 0.0928818958 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_000193_070 0.093006935 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
9 Hb_002518_230 0.0937130099 - - -
10 Hb_149507_010 0.0970523837 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
11 Hb_047612_010 0.0980087285 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
12 Hb_000368_050 0.1017597207 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_009252_070 0.1029565777 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
14 Hb_000417_210 0.1047683124 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002391_240 0.1057271767 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007370_010 0.1058088535 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
17 Hb_004466_090 0.1058675575 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003376_140 0.1060229197 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
19 Hb_005332_160 0.1074327849 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
20 Hb_000910_060 0.1080629249 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_012395_060 Hb_012395_060 Hb_169077_030 Hb_169077_030 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001269_660 Hb_001269_660 Hb_012395_060--Hb_001269_660 Hb_001534_140 Hb_001534_140 Hb_012395_060--Hb_001534_140 Hb_138585_010 Hb_138585_010 Hb_012395_060--Hb_138585_010 Hb_000152_570 Hb_000152_570 Hb_012395_060--Hb_000152_570 Hb_007370_010 Hb_007370_010 Hb_169077_030--Hb_007370_010 Hb_169077_030--Hb_000152_570 Hb_006154_010 Hb_006154_010 Hb_169077_030--Hb_006154_010 Hb_000193_070 Hb_000193_070 Hb_169077_030--Hb_000193_070 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160 Hb_027506_030 Hb_027506_030 Hb_004804_010--Hb_027506_030 Hb_004804_010--Hb_138585_010 Hb_085962_010 Hb_085962_010 Hb_004804_010--Hb_085962_010 Hb_010264_020 Hb_010264_020 Hb_004804_010--Hb_010264_020 Hb_004804_010--Hb_169077_030 Hb_149507_010 Hb_149507_010 Hb_001269_660--Hb_149507_010 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001277_010 Hb_001277_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_010142_060 Hb_010142_060 Hb_001534_140--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_001534_140--Hb_000368_050 Hb_001534_140--Hb_005332_160 Hb_001534_140--Hb_138585_010 Hb_001534_140--Hb_169077_030 Hb_006846_040 Hb_006846_040 Hb_138585_010--Hb_006846_040 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_000903_040 Hb_000903_040 Hb_138585_010--Hb_000903_040 Hb_000103_300 Hb_000103_300 Hb_000152_570--Hb_000103_300 Hb_000152_570--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000152_570--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_000152_570--Hb_007370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019367 0.274058 1.49004 5.64754 0.0181479 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.950085 3.51689

CAGE analysis