Hb_006154_010

Information

Type -
Description -
Location Contig6154: 22374-23816
Sequence    

Annotation

kegg
ID rcu:RCOM_1621050
description UDP-glucose 6-dehydrogenase, putative (EC:1.1.1.22)
nr
ID XP_002512099.1
description UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
swissprot
ID Q96558
description UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1
trembl
ID B9REG0
description UDP-glucose 6-dehydrogenase OS=Ricinus communis GN=RCOM_1621050 PE=3 SV=1
Gene Ontology
ID GO:0003979
description udp-glucose 6-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51208: 21328-24066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006154_010 0.0 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
2 Hb_001079_050 0.0661436777 - - Calmodulin, putative [Ricinus communis]
3 Hb_000103_300 0.0770930414 - - PREDICTED: perakine reductase-like [Jatropha curcas]
4 Hb_000193_070 0.0775798387 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
5 Hb_003376_140 0.077847644 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
6 Hb_169077_030 0.0800638821 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
7 Hb_000152_570 0.0918358873 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_002384_030 0.0973699033 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004531_160 0.0997431751 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
10 Hb_178049_010 0.1025379223 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_002370_050 0.1026652294 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
12 Hb_002391_240 0.1042215743 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010142_060 0.105296206 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_002284_060 0.1083356602 - - sugar transporter, putative [Ricinus communis]
15 Hb_000395_310 0.1092250571 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_001410_080 0.1094120886 - - ring finger protein, putative [Ricinus communis]
17 Hb_133492_010 0.11094937 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_141194_020 0.1137978546 - - carbohydrate transporter, putative [Ricinus communis]
19 Hb_004032_290 0.1139321342 - - protein binding protein, putative [Ricinus communis]
20 Hb_007370_010 0.1147099266 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]

Gene co-expression network

sample Hb_006154_010 Hb_006154_010 Hb_001079_050 Hb_001079_050 Hb_006154_010--Hb_001079_050 Hb_000103_300 Hb_000103_300 Hb_006154_010--Hb_000103_300 Hb_000193_070 Hb_000193_070 Hb_006154_010--Hb_000193_070 Hb_003376_140 Hb_003376_140 Hb_006154_010--Hb_003376_140 Hb_169077_030 Hb_169077_030 Hb_006154_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_006154_010--Hb_000152_570 Hb_001079_050--Hb_169077_030 Hb_001079_050--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_001079_050--Hb_004531_160 Hb_001079_050--Hb_000103_300 Hb_010142_060 Hb_010142_060 Hb_001079_050--Hb_010142_060 Hb_000103_300--Hb_000152_570 Hb_000103_300--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000103_300--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000103_300--Hb_002391_240 Hb_000103_300--Hb_169077_030 Hb_000193_070--Hb_000152_570 Hb_000193_070--Hb_002391_240 Hb_000193_070--Hb_002284_060 Hb_000193_070--Hb_169077_030 Hb_003376_140--Hb_004531_160 Hb_006788_110 Hb_006788_110 Hb_003376_140--Hb_006788_110 Hb_003376_140--Hb_169077_030 Hb_003376_140--Hb_000193_070 Hb_003376_140--Hb_000103_300 Hb_007370_010 Hb_007370_010 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_169077_030--Hb_000152_570 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160 Hb_000152_570--Hb_002284_060 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_000152_570--Hb_007370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0143297 3.05364 4.78172 21.2402 0.0287183 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.73966 8.96124

CAGE analysis