Hb_010142_060

Information

Type -
Description -
Location Contig10142: 43164-44350
Sequence    

Annotation

kegg
ID rcu:RCOM_1037530
description Blue copper protein precursor, putative
nr
ID XP_002513980.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID B9RJR1
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1037530 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00737: 43111-44068
cDNA
(Sanger)
(ID:Location)		 004_K09.ab1: 43238-44068 , 011_L17.ab1: 43251-44068

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_060 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_001534_140 0.0626066492 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
3 Hb_004531_160 0.0653630535 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
4 Hb_000676_230 0.070133797 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
5 Hb_000368_050 0.0814404685 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_004032_290 0.0847963376 - - protein binding protein, putative [Ricinus communis]
7 Hb_000395_310 0.0862673154 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_004020_030 0.0905161745 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
9 Hb_000866_130 0.0946640155 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
10 Hb_003376_140 0.0958229916 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
11 Hb_005116_150 0.096572767 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
12 Hb_002600_120 0.0996264074 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
13 Hb_007760_020 0.1008746604 - - PREDICTED: expansin-A1 [Populus euphratica]
14 Hb_001079_050 0.1028854677 - - Calmodulin, putative [Ricinus communis]
15 Hb_002388_070 0.1037471672 - - ring finger protein, putative [Ricinus communis]
16 Hb_006154_010 0.105296206 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
17 Hb_000449_070 0.1055319353 - - unnamed protein product [Vitis vinifera]
18 Hb_005332_160 0.1056970556 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
19 Hb_004650_120 0.1057385895 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
20 Hb_000230_410 0.1058119649 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]

Gene co-expression network

sample Hb_010142_060 Hb_010142_060 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310 Hb_001534_140--Hb_000368_050 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_138585_010 Hb_138585_010 Hb_001534_140--Hb_138585_010 Hb_169077_030 Hb_169077_030 Hb_001534_140--Hb_169077_030 Hb_012395_060 Hb_012395_060 Hb_001534_140--Hb_012395_060 Hb_003376_140 Hb_003376_140 Hb_004531_160--Hb_003376_140 Hb_001079_050 Hb_001079_050 Hb_004531_160--Hb_001079_050 Hb_003607_090 Hb_003607_090 Hb_004531_160--Hb_003607_090 Hb_002600_120 Hb_002600_120 Hb_004531_160--Hb_002600_120 Hb_005648_020 Hb_005648_020 Hb_004531_160--Hb_005648_020 Hb_000676_230--Hb_004032_290 Hb_000676_230--Hb_000368_050 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_000364_090 Hb_000364_090 Hb_000676_230--Hb_000364_090 Hb_182869_010 Hb_182869_010 Hb_000368_050--Hb_182869_010 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_002874_200 Hb_002874_200 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_007185_050 Hb_007185_050 Hb_004032_290--Hb_007185_050 Hb_004032_290--Hb_000395_310 Hb_000230_410 Hb_000230_410 Hb_004032_290--Hb_000230_410 Hb_002388_070 Hb_002388_070 Hb_000395_310--Hb_002388_070 Hb_000395_310--Hb_002874_200 Hb_000395_310--Hb_000230_410 Hb_003466_010 Hb_003466_010 Hb_000395_310--Hb_003466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29477 24.163 90.4284 435.398 0.436119 0.385355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 27.4406 163.736

CAGE analysis