Hb_004531_160

Information

Type -
Description -
Location Contig4531: 106341-109753
Sequence    

Annotation

kegg
ID rcu:RCOM_1492980
description transcription factor, putative
nr
ID XP_012073390.1
description PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S3D1
description Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2
trembl
ID A0A067KME3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06318 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh68-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43320: 106333-106665 , PASA_asmbl_43321: 108184-109628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_160 0.0 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
2 Hb_010142_060 0.0653630535 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_003376_140 0.0724878562 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
4 Hb_001079_050 0.0892376971 - - Calmodulin, putative [Ricinus communis]
5 Hb_003607_090 0.0902198592 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
6 Hb_002600_120 0.0906413175 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
7 Hb_005648_020 0.0918035545 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
8 Hb_001534_140 0.0927161968 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
9 Hb_000395_310 0.0928781277 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_005332_160 0.0943333453 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
11 Hb_000093_010 0.0969406126 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
12 Hb_002701_030 0.098129279 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
13 Hb_006788_110 0.099053409 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
14 Hb_006154_010 0.0997431751 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
15 Hb_000910_030 0.1019936254 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003849_170 0.1034826496 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
17 Hb_141194_020 0.1053482065 - - carbohydrate transporter, putative [Ricinus communis]
18 Hb_169077_030 0.1087389843 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
19 Hb_000676_230 0.1092110032 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
20 Hb_003466_010 0.1113129336 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]

Gene co-expression network

sample Hb_004531_160 Hb_004531_160 Hb_010142_060 Hb_010142_060 Hb_004531_160--Hb_010142_060 Hb_003376_140 Hb_003376_140 Hb_004531_160--Hb_003376_140 Hb_001079_050 Hb_001079_050 Hb_004531_160--Hb_001079_050 Hb_003607_090 Hb_003607_090 Hb_004531_160--Hb_003607_090 Hb_002600_120 Hb_002600_120 Hb_004531_160--Hb_002600_120 Hb_005648_020 Hb_005648_020 Hb_004531_160--Hb_005648_020 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310 Hb_006788_110 Hb_006788_110 Hb_003376_140--Hb_006788_110 Hb_006154_010 Hb_006154_010 Hb_003376_140--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_003376_140--Hb_169077_030 Hb_000193_070 Hb_000193_070 Hb_003376_140--Hb_000193_070 Hb_000103_300 Hb_000103_300 Hb_003376_140--Hb_000103_300 Hb_001079_050--Hb_006154_010 Hb_001079_050--Hb_169077_030 Hb_001079_050--Hb_003376_140 Hb_001079_050--Hb_000103_300 Hb_001079_050--Hb_010142_060 Hb_000910_030 Hb_000910_030 Hb_003607_090--Hb_000910_030 Hb_005332_160 Hb_005332_160 Hb_003607_090--Hb_005332_160 Hb_000163_170 Hb_000163_170 Hb_003607_090--Hb_000163_170 Hb_000659_050 Hb_000659_050 Hb_003607_090--Hb_000659_050 Hb_002869_090 Hb_002869_090 Hb_003607_090--Hb_002869_090 Hb_002701_030 Hb_002701_030 Hb_002600_120--Hb_002701_030 Hb_002600_120--Hb_010142_060 Hb_003849_170 Hb_003849_170 Hb_002600_120--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_002600_120--Hb_000093_010 Hb_002600_120--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130812 1.19624 4.13775 19.1835 0.0734998 0.0734511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0595773 0 0 1.85122 6.13898

CAGE analysis