Hb_003466_010

Information

Type -
Description -
Location Contig3466: 35139-39407
Sequence    

Annotation

kegg
ID rcu:RCOM_0852180
description nitrate transporter, putative
nr
ID XP_012082848.1
description PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID A0A067LM36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09718 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36146: 35149-39508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003466_010 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
2 Hb_005648_020 0.0714951593 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
3 Hb_000093_010 0.0728606667 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
4 Hb_000866_130 0.074019109 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
5 Hb_036520_030 0.0847369304 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
6 Hb_012132_050 0.0848873441 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
7 Hb_008021_050 0.0849266546 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000395_310 0.0853425605 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_001789_230 0.0856528534 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000849_030 0.0883751543 - - PREDICTED: fimbrin-2 [Jatropha curcas]
11 Hb_004032_290 0.0889137009 - - protein binding protein, putative [Ricinus communis]
12 Hb_003607_080 0.0910658957 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
13 Hb_001110_060 0.0919516157 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
14 Hb_002918_270 0.0940917118 - - PREDICTED: protein E6-like [Populus euphratica]
15 Hb_001408_080 0.095216655 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
16 Hb_178049_010 0.0953589693 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
17 Hb_002388_070 0.0973565868 - - ring finger protein, putative [Ricinus communis]
18 Hb_000020_200 0.1008512096 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
19 Hb_002874_200 0.1016248046 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
20 Hb_003893_180 0.1017302136 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]

Gene co-expression network

sample Hb_003466_010 Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020 Hb_000093_010--Hb_003607_080 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_001818_010 Hb_001818_010 Hb_000866_130--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000866_130--Hb_006153_140 Hb_004032_290 Hb_004032_290 Hb_000866_130--Hb_004032_290 Hb_000083_200 Hb_000083_200 Hb_000866_130--Hb_000083_200 Hb_004020_030 Hb_004020_030 Hb_000866_130--Hb_004020_030 Hb_036520_030--Hb_004032_290 Hb_001408_080 Hb_001408_080 Hb_036520_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_009783_010 Hb_009783_010 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_012132_050--Hb_001136_160 Hb_012132_050--Hb_001408_080 Hb_008021_050--Hb_003607_080 Hb_008021_050--Hb_001688_030 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.6485 40.8812 145.48 0.0914895 0.136462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042342 0.0166583 0 7.65058 38.084

CAGE analysis