Hb_003607_080

Information

Type -
Description -
Location Contig3607: 95831-98403
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25300g
description POPTRDRAFT_553251; kinase-like protein TMKL1 precursor
nr
ID XP_012085161.1
description PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
swissprot
ID P33543
description Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1
trembl
ID A0A067K3N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17577 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinase-like protein tmkl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37163: 96635-98210 , PASA_asmbl_37164: 98290-98443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_080 0.0 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
2 Hb_008021_050 0.0676739548 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000093_010 0.0728533148 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
4 Hb_005648_020 0.0730811526 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
5 Hb_005215_050 0.0801308341 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
6 Hb_170077_020 0.0896555378 - - PREDICTED: probable serine incorporator [Jatropha curcas]
7 Hb_003466_010 0.0910658957 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
8 Hb_003849_170 0.0967626771 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_004558_060 0.1008413176 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
10 Hb_001369_190 0.1015011179 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
11 Hb_002384_030 0.103179364 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002768_040 0.1057697931 - - conserved hypothetical protein [Ricinus communis]
13 Hb_135757_030 0.1076646388 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
14 Hb_001663_060 0.1082362719 - - ribonuclease t2, putative [Ricinus communis]
15 Hb_000614_120 0.1090376644 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
16 Hb_002260_140 0.1096432708 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001789_230 0.1096775109 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008731_010 0.1101443755 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
19 Hb_007919_010 0.1108747282 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001688_030 0.1124176287 - - hypothetical protein JCGZ_10716 [Jatropha curcas]

Gene co-expression network

sample Hb_003607_080 Hb_003607_080 Hb_008021_050 Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_003607_080--Hb_000093_010 Hb_005648_020 Hb_005648_020 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003466_010 Hb_003466_010 Hb_003607_080--Hb_003466_010 Hb_008021_050--Hb_003466_010 Hb_008021_050--Hb_000093_010 Hb_001688_030 Hb_001688_030 Hb_008021_050--Hb_001688_030 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010 Hb_000093_010--Hb_003466_010 Hb_000093_010--Hb_005648_020 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_000093_010--Hb_001688_030 Hb_005648_020--Hb_003466_010 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_170077_020 Hb_005215_050--Hb_005648_020 Hb_002384_030 Hb_002384_030 Hb_005215_050--Hb_002384_030 Hb_001369_190 Hb_001369_190 Hb_005215_050--Hb_001369_190 Hb_004558_060 Hb_004558_060 Hb_005215_050--Hb_004558_060 Hb_005215_050--Hb_008021_050 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_003849_170 Hb_001257_140 Hb_001257_140 Hb_170077_020--Hb_001257_140 Hb_000352_360 Hb_000352_360 Hb_170077_020--Hb_000352_360 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0291954 1.25702 1.83932 9.80204 0.0474562 0.0357118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0221145 0 0 0.65754 1.83966

CAGE analysis