Hb_005215_050

Information

Type -
Description -
Location Contig5215: 126900-129561
Sequence    

Annotation

kegg
ID rcu:RCOM_1153510
description LIM domain kinase, putative (EC:1.3.1.74)
nr
ID XP_012079309.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
swissprot
ID C0LGS3
description Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1
trembl
ID A0A067KI93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12456 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g37250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46808: 126814-129617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005215_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
2 Hb_003607_080 0.0801308341 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
3 Hb_005648_020 0.0882541119 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
4 Hb_002384_030 0.0963863965 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001369_190 0.1019643147 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
6 Hb_004558_060 0.1044284274 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
7 Hb_008021_050 0.10833456 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_135757_030 0.1089829709 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
9 Hb_000093_010 0.1104264828 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
10 Hb_003849_170 0.1131913133 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
11 Hb_009736_020 0.1131976201 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
12 Hb_002388_070 0.1169116226 - - ring finger protein, putative [Ricinus communis]
13 Hb_003466_010 0.1183840006 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
14 Hb_001418_050 0.11956264 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
15 Hb_006088_020 0.1205263661 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_170077_020 0.1224207644 - - PREDICTED: probable serine incorporator [Jatropha curcas]
17 Hb_000011_280 0.1228711903 - - pectinesterase family protein [Populus trichocarpa]
18 Hb_010863_020 0.1234735746 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
19 Hb_000395_310 0.1237778421 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_003175_120 0.124038312 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005215_050 Hb_005215_050 Hb_003607_080 Hb_003607_080 Hb_005215_050--Hb_003607_080 Hb_005648_020 Hb_005648_020 Hb_005215_050--Hb_005648_020 Hb_002384_030 Hb_002384_030 Hb_005215_050--Hb_002384_030 Hb_001369_190 Hb_001369_190 Hb_005215_050--Hb_001369_190 Hb_004558_060 Hb_004558_060 Hb_005215_050--Hb_004558_060 Hb_008021_050 Hb_008021_050 Hb_005215_050--Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_003607_080--Hb_000093_010 Hb_003607_080--Hb_005648_020 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003466_010 Hb_003466_010 Hb_003607_080--Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_000093_010 Hb_005648_020--Hb_170077_020 Hb_008731_010 Hb_008731_010 Hb_002384_030--Hb_008731_010 Hb_001360_020 Hb_001360_020 Hb_002384_030--Hb_001360_020 Hb_027405_010 Hb_027405_010 Hb_002384_030--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_002000_100 Hb_002000_100 Hb_002384_030--Hb_002000_100 Hb_000344_030 Hb_000344_030 Hb_002384_030--Hb_000344_030 Hb_001369_190--Hb_004558_060 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_001369_190--Hb_002918_270 Hb_001369_190--Hb_003607_080 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_004558_060--Hb_009736_020 Hb_002171_020 Hb_002171_020 Hb_004558_060--Hb_002171_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_004558_060--Hb_002918_270 Hb_008021_050--Hb_003466_010 Hb_008021_050--Hb_000093_010 Hb_001688_030 Hb_001688_030 Hb_008021_050--Hb_001688_030 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.556263 2.54022 3.92423 22.1476 0.033271 0.0153814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191755 0 0.0287177 1.46282 4.54621

CAGE analysis