Hb_002918_270

Information

Type -
Description -
Location Contig2918: 234364-235089
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05640g
description hypothetical protein
nr
ID XP_011001231.1
description PREDICTED: protein E6-like [Populus euphratica]
swissprot
ID Q01197
description Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1
trembl
ID A0A067JLX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21476 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30625: 234059-235165
cDNA
(Sanger)
(ID:Location)		 006_O10.ab1: 234412-235150 , 007_P22.ab1: 234414-235146 , 012_J10.ab1: 234414-235146 , 017_D05.ab1: 234651-235148 , 022_O22.ab1: 234493-235143 , 023_C14.ab1: 234441-235146 , 043_N01.ab1: 234361-235146

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_270 0.0 - - PREDICTED: protein E6-like [Populus euphratica]
2 Hb_050898_030 0.0655129042 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001789_230 0.0798077052 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005648_020 0.0918327044 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
5 Hb_015292_020 0.0927507777 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_003466_010 0.0940917118 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
7 Hb_012132_050 0.0956356982 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
8 Hb_001369_190 0.0963688851 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
9 Hb_009736_020 0.0969632239 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
10 Hb_006088_020 0.0970733334 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_007122_020 0.09921868 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_004558_060 0.1001108891 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
13 Hb_003893_180 0.1019369469 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
14 Hb_007904_280 0.1068865021 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
15 Hb_003090_220 0.1107949487 - - PREDICTED: copper transporter 4 [Jatropha curcas]
16 Hb_001408_080 0.1108152459 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
17 Hb_000849_030 0.1125475878 - - PREDICTED: fimbrin-2 [Jatropha curcas]
18 Hb_000964_040 0.1143334327 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
19 Hb_000333_140 0.1143952233 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
20 Hb_001110_060 0.1156017922 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002918_270 Hb_002918_270 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_001789_230 Hb_001789_230 Hb_002918_270--Hb_001789_230 Hb_005648_020 Hb_005648_020 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_003466_010 Hb_003466_010 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_020738_010 Hb_020738_010 Hb_050898_030--Hb_020738_010 Hb_007122_020 Hb_007122_020 Hb_050898_030--Hb_007122_020 Hb_050898_030--Hb_015292_020 Hb_001136_160 Hb_001136_160 Hb_050898_030--Hb_001136_160 Hb_001025_130 Hb_001025_130 Hb_050898_030--Hb_001025_130 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_000964_040 Hb_000964_040 Hb_001789_230--Hb_000964_040 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_001789_230--Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_015292_020--Hb_007122_020 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_007904_280 Hb_007904_280 Hb_012132_050--Hb_007904_280 Hb_009783_010 Hb_009783_010 Hb_012132_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_012132_050--Hb_001898_040 Hb_012132_050--Hb_001136_160 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77012 30.4534 99.065 257.779 1.8347 1.14587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384641 0 0 13.2676 52.1409

CAGE analysis