Hb_001709_120

Information

Type -
Description -
Location Contig1709: 207395-208740
Sequence    

Annotation

kegg
ID rcu:RCOM_1313640
description hypothetical protein
nr
ID XP_002518920.1
description hypothetical protein RCOM_1313640 [Ricinus communis]
swissprot
ID F4I878
description Protein BRANCHLESS TRICHOME OS=Arabidopsis thaliana GN=BLT PE=1 SV=1
trembl
ID B9RYV1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313640 PE=4 SV=1
Gene Ontology
ID GO:0010091
description protein branchless trichome

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_120 0.0 - - hypothetical protein RCOM_1313640 [Ricinus communis]
2 Hb_001025_130 0.0513808233 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
3 Hb_015292_020 0.0760361235 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_002902_060 0.0761271903 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
5 Hb_174639_010 0.0801661821 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001056_040 0.0845146335 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
7 Hb_006483_070 0.0845850747 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_001975_110 0.0853415545 - - -
9 Hb_001136_080 0.0858150207 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
10 Hb_000333_140 0.0920704453 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_000586_110 0.092925763 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_026218_010 0.0963277648 - - conserved hypothetical protein [Ricinus communis]
13 Hb_162472_010 0.0993088659 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011628_010 0.1014720833 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_001856_210 0.1029316712 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
16 Hb_001775_140 0.1044343557 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
17 Hb_000320_010 0.1054133438 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005731_040 0.1055046618 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
19 Hb_007122_020 0.1059987331 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_016911_010 0.1086240059 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]

Gene co-expression network

sample Hb_001709_120 Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_001709_120--Hb_001025_130 Hb_015292_020 Hb_015292_020 Hb_001709_120--Hb_015292_020 Hb_002902_060 Hb_002902_060 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_006483_070 Hb_006483_070 Hb_001709_120--Hb_006483_070 Hb_001025_130--Hb_015292_020 Hb_001025_130--Hb_006483_070 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_002902_060--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_002902_060--Hb_001047_090 Hb_002902_060--Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_002902_060--Hb_001975_110 Hb_001007_020 Hb_001007_020 Hb_174639_010--Hb_001007_020 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_001140_300 Hb_001140_300 Hb_001056_040--Hb_001140_300 Hb_009252_080 Hb_009252_080 Hb_001056_040--Hb_009252_080 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001709_090 Hb_001709_090 Hb_001056_040--Hb_001709_090 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_006483_070--Hb_162472_010 Hb_006483_070--Hb_015292_020 Hb_006483_070--Hb_001975_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185303 0.336369 4.18059 7.6342 0 0.0162913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.133516 1.44461

CAGE analysis