Hb_000320_010

Information

Type -
Description -
Location Contig320: 23430-24784
Sequence    

Annotation

kegg
ID rcu:RCOM_0903710
description hypothetical protein
nr
ID XP_002518443.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903710 PE=4 SV=1
Gene Ontology
ID GO:0016301
description wall-associated receptor kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33782: 23426-24636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000134_130 0.0753121859 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
3 Hb_040852_010 0.0823777188 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001007_020 0.0832551849 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
5 Hb_003894_110 0.0841118449 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
6 Hb_003376_020 0.0874532259 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_174639_010 0.0906806813 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_098315_060 0.0917170281 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
9 Hb_152910_050 0.094929615 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_001025_130 0.098553956 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
11 Hb_002894_060 0.0994228094 - - respiratory burst oxidase D [Manihot esculenta]
12 Hb_000373_020 0.1027142441 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
13 Hb_001709_120 0.1054133438 - - hypothetical protein RCOM_1313640 [Ricinus communis]
14 Hb_000363_390 0.1055756718 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_000103_220 0.1088429948 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
16 Hb_004202_020 0.1094783384 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000418_110 0.1110272942 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
18 Hb_000676_360 0.1111930884 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
19 Hb_001349_050 0.1162397715 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
20 Hb_001021_120 0.1162808839 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_010 Hb_000320_010 Hb_000134_130 Hb_000134_130 Hb_000320_010--Hb_000134_130 Hb_040852_010 Hb_040852_010 Hb_000320_010--Hb_040852_010 Hb_001007_020 Hb_001007_020 Hb_000320_010--Hb_001007_020 Hb_003894_110 Hb_003894_110 Hb_000320_010--Hb_003894_110 Hb_003376_020 Hb_003376_020 Hb_000320_010--Hb_003376_020 Hb_174639_010 Hb_174639_010 Hb_000320_010--Hb_174639_010 Hb_152910_050 Hb_152910_050 Hb_000134_130--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_000134_130--Hb_098315_060 Hb_000134_130--Hb_040852_010 Hb_000134_130--Hb_003894_110 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_000134_130--Hb_003376_020 Hb_040852_010--Hb_152910_050 Hb_040852_010--Hb_003894_110 Hb_040852_010--Hb_098315_060 Hb_040852_010--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_040852_010--Hb_004202_020 Hb_000418_110 Hb_000418_110 Hb_001007_020--Hb_000418_110 Hb_002894_060 Hb_002894_060 Hb_001007_020--Hb_002894_060 Hb_001007_020--Hb_000134_130 Hb_001007_020--Hb_174639_010 Hb_001007_020--Hb_003894_110 Hb_001349_050 Hb_001349_050 Hb_001007_020--Hb_001349_050 Hb_003894_110--Hb_152910_050 Hb_003894_110--Hb_098315_060 Hb_003894_110--Hb_003376_020 Hb_003894_110--Hb_004202_020 Hb_003376_020--Hb_152910_050 Hb_003376_020--Hb_098315_060 Hb_000103_220 Hb_000103_220 Hb_003376_020--Hb_000103_220 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180026 4.40331 5.47267 0.0190112 0.0666891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0820168 1.68772

CAGE analysis