Hb_001349_050

Information

Type -
Description -
Location Contig1349: 71929-73287
Sequence    

Annotation

kegg
ID rcu:RCOM_0705030
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_012082020.1
description PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID A0A067K2U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18279 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09844: 71422-73033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001349_050 0.0 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
2 Hb_002894_060 0.0467282427 - - respiratory burst oxidase D [Manihot esculenta]
3 Hb_001623_250 0.060606888 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
4 Hb_002818_060 0.0763246966 - - zinc finger protein, putative [Ricinus communis]
5 Hb_003006_070 0.0783797431 - - aquaporin [Manihot esculenta]
6 Hb_019516_010 0.0807670513 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
7 Hb_002053_100 0.081890465 - - actin binding protein, putative [Ricinus communis]
8 Hb_001007_020 0.0820311996 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
9 Hb_002203_010 0.0841515107 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
10 Hb_000418_110 0.0844473287 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
11 Hb_005276_190 0.0870530432 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
12 Hb_002836_110 0.0891906661 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
13 Hb_001958_040 0.0941843059 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
14 Hb_003085_070 0.0962247272 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
15 Hb_004128_150 0.0966076743 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
16 Hb_000359_100 0.1004653812 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000373_020 0.1004814122 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
18 Hb_000073_040 0.1015224647 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
19 Hb_023640_020 0.1030447755 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004410_020 0.105107187 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]

Gene co-expression network

sample Hb_001349_050 Hb_001349_050 Hb_002894_060 Hb_002894_060 Hb_001349_050--Hb_002894_060 Hb_001623_250 Hb_001623_250 Hb_001349_050--Hb_001623_250 Hb_002818_060 Hb_002818_060 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_001007_020 Hb_001007_020 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_002894_060--Hb_001623_250 Hb_001623_250--Hb_003006_070 Hb_002836_110 Hb_002836_110 Hb_001623_250--Hb_002836_110 Hb_003085_070 Hb_003085_070 Hb_001623_250--Hb_003085_070 Hb_001623_250--Hb_002818_060 Hb_002203_010 Hb_002203_010 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390 Hb_003006_070--Hb_003085_070 Hb_000375_220 Hb_000375_220 Hb_003006_070--Hb_000375_220 Hb_003006_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003006_070--Hb_006614_020 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_019516_010--Hb_000134_130 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_019516_010--Hb_004007_050 Hb_001439_240 Hb_001439_240 Hb_002053_100--Hb_001439_240 Hb_000830_010 Hb_000830_010 Hb_002053_100--Hb_000830_010 Hb_005276_190 Hb_005276_190 Hb_002053_100--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_002053_100--Hb_000340_550 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.958253 21.4483 16.5929 0.0297728 0.0313428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.682758 4.81992

CAGE analysis