Hb_002836_110

Information

Type transcription factor
Description TF Family: TUB
Location Contig2836: 145786-148473
Sequence    

Annotation

kegg
ID rcu:RCOM_1442630
description Tubby protein, putative
nr
ID XP_012067458.1
description PREDICTED: tubby-like protein 8 [Jatropha curcas]
swissprot
ID Q9S9M8
description Tubby-like protein 8 OS=Arabidopsis thaliana GN=TULP8 PE=2 SV=1
trembl
ID A0A067LCW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26957 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tubby-like protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29680: 145888-148653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_110 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
2 Hb_009113_020 0.0643843249 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
3 Hb_001623_250 0.0695445897 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
4 Hb_003006_070 0.0750734481 - - aquaporin [Manihot esculenta]
5 Hb_001349_050 0.0891906661 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
6 Hb_003085_070 0.0900035673 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
7 Hb_000538_290 0.0984909277 - - hypothetical protein RCOM_0303940 [Ricinus communis]
8 Hb_000373_020 0.1003534408 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
9 Hb_004410_020 0.1017397502 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_002818_060 0.1029825397 - - zinc finger protein, putative [Ricinus communis]
11 Hb_003185_040 0.1039713698 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
12 Hb_001856_210 0.1047704347 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
13 Hb_000671_020 0.1051210135 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
14 Hb_006198_100 0.1052807659 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_002686_320 0.106228044 - - syntaxin, putative [Ricinus communis]
16 Hb_002894_060 0.1069600527 - - respiratory burst oxidase D [Manihot esculenta]
17 Hb_005398_050 0.1079228933 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
18 Hb_078448_010 0.1094864731 - - hypothetical protein L484_017526 [Morus notabilis]
19 Hb_000878_080 0.1155412678 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
20 Hb_002203_010 0.1158758064 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_002836_110 Hb_002836_110 Hb_009113_020 Hb_009113_020 Hb_002836_110--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_002836_110--Hb_001623_250 Hb_003006_070 Hb_003006_070 Hb_002836_110--Hb_003006_070 Hb_001349_050 Hb_001349_050 Hb_002836_110--Hb_001349_050 Hb_003085_070 Hb_003085_070 Hb_002836_110--Hb_003085_070 Hb_000538_290 Hb_000538_290 Hb_002836_110--Hb_000538_290 Hb_002686_320 Hb_002686_320 Hb_009113_020--Hb_002686_320 Hb_009113_020--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_001623_250--Hb_003006_070 Hb_001623_250--Hb_001349_050 Hb_001623_250--Hb_003085_070 Hb_002894_060 Hb_002894_060 Hb_001623_250--Hb_002894_060 Hb_002818_060 Hb_002818_060 Hb_001623_250--Hb_002818_060 Hb_003006_070--Hb_003085_070 Hb_000375_220 Hb_000375_220 Hb_003006_070--Hb_000375_220 Hb_006614_020 Hb_006614_020 Hb_003006_070--Hb_006614_020 Hb_003006_070--Hb_001349_050 Hb_001349_050--Hb_002894_060 Hb_001349_050--Hb_002818_060 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_003085_070--Hb_006614_020 Hb_003085_070--Hb_000375_220 Hb_000538_290--Hb_002686_320 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000701_020 Hb_000701_020 Hb_000538_290--Hb_000701_020 Hb_000977_190 Hb_000977_190 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0917891 6.29604 5.67987 0.0500749 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.282108 0.993527

CAGE analysis