Hb_000701_020

Information

Type -
Description -
Location Contig701: 88870-93197
Sequence    

Annotation

kegg
ID rcu:RCOM_0820870
description hypothetical protein
nr
ID XP_012082196.1
description PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
swissprot
ID O80588
description Protein ENDOSPERM DEFECTIVE 1 OS=Arabidopsis thaliana GN=EDE1 PE=1 SV=1
trembl
ID A0A067K1S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54854: 88186-92110 , PASA_asmbl_54855: 92242-92527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000701_020 0.0 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
2 Hb_000345_450 0.0711846562 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
3 Hb_002686_320 0.0795401688 - - syntaxin, putative [Ricinus communis]
4 Hb_000538_290 0.0892596932 - - hypothetical protein RCOM_0303940 [Ricinus communis]
5 Hb_006588_100 0.0900135671 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000977_190 0.0945894432 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000671_020 0.0965020172 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
8 Hb_009113_020 0.0979493781 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
9 Hb_009545_060 0.1020159963 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
10 Hb_000480_060 0.1033936657 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
11 Hb_001699_270 0.1062770642 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
12 Hb_000261_550 0.1071456719 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
13 Hb_001950_090 0.1073919675 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
14 Hb_005398_050 0.1140998859 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
15 Hb_001348_100 0.1142120164 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
16 Hb_004592_030 0.1163957471 - - unknown [Lotus japonicus]
17 Hb_000187_050 0.116622667 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
18 Hb_005332_030 0.1182812546 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003902_070 0.1210540235 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001307_150 0.1221374793 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000701_020 Hb_000701_020 Hb_000345_450 Hb_000345_450 Hb_000701_020--Hb_000345_450 Hb_002686_320 Hb_002686_320 Hb_000701_020--Hb_002686_320 Hb_000538_290 Hb_000538_290 Hb_000701_020--Hb_000538_290 Hb_006588_100 Hb_006588_100 Hb_000701_020--Hb_006588_100 Hb_000977_190 Hb_000977_190 Hb_000701_020--Hb_000977_190 Hb_000671_020 Hb_000671_020 Hb_000701_020--Hb_000671_020 Hb_000480_060 Hb_000480_060 Hb_000345_450--Hb_000480_060 Hb_001307_150 Hb_001307_150 Hb_000345_450--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_000345_450--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_000345_450--Hb_001699_270 Hb_000345_450--Hb_006588_100 Hb_009113_020 Hb_009113_020 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_002686_320--Hb_006588_100 Hb_000538_290--Hb_009113_020 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_006588_100--Hb_000480_060 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_006588_100--Hb_001699_270 Hb_006588_100--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_006588_100--Hb_000140_200 Hb_005332_030 Hb_005332_030 Hb_000977_190--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000977_190--Hb_159809_040 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030 Hb_000261_550 Hb_000261_550 Hb_000671_020--Hb_000261_550 Hb_072620_010 Hb_072620_010 Hb_000671_020--Hb_072620_010 Hb_012395_040 Hb_012395_040 Hb_000671_020--Hb_012395_040 Hb_000116_050 Hb_000116_050 Hb_000671_020--Hb_000116_050 Hb_034420_010 Hb_034420_010 Hb_000671_020--Hb_034420_010 Hb_009113_060 Hb_009113_060 Hb_000671_020--Hb_009113_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.013217 2.38645 1.94228 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0302538 0 0 0.322905 0.249256

CAGE analysis