Hb_034420_010

Information

Type -
Description -
Location Contig34420: 734-1066
Sequence    

Annotation

kegg
ID gmx:547520
description GSTa; 2,4-D inducible glutathione S-transferase
nr
ID ABG90381.2
description glutathione S-transferase [Caragana korshinskii]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q0PN10
description Glutathione S-transferase OS=Caragana korshinskii GN=GST PE=3 SV=2
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034420_010 0.0 - - glutathione S-transferase [Caragana korshinskii]
2 Hb_001257_070 0.0685611171 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
3 Hb_000134_300 0.0777394664 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_012395_040 0.082447311 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000802_070 0.0861653147 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]
6 Hb_000671_020 0.0917531698 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
7 Hb_000394_120 0.0931626909 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
8 Hb_000116_050 0.0991550053 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
9 Hb_004774_080 0.099172912 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003680_180 0.1009675124 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_006573_310 0.1016996655 - - Tellurite resistance protein tehA, putative [Ricinus communis]
12 Hb_009113_060 0.1048129409 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005914_100 0.1053167089 - - conserved hypothetical protein [Ricinus communis]
14 Hb_072620_010 0.107559926 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
15 Hb_000732_090 0.1078935974 - - cyclin d, putative [Ricinus communis]
16 Hb_002928_150 0.1092580135 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
17 Hb_004097_030 0.1103654832 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
18 Hb_000675_130 0.1108323516 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
19 Hb_008226_050 0.1112074222 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
20 Hb_056196_020 0.1140924073 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_034420_010 Hb_034420_010 Hb_001257_070 Hb_001257_070 Hb_034420_010--Hb_001257_070 Hb_000134_300 Hb_000134_300 Hb_034420_010--Hb_000134_300 Hb_012395_040 Hb_012395_040 Hb_034420_010--Hb_012395_040 Hb_000802_070 Hb_000802_070 Hb_034420_010--Hb_000802_070 Hb_000671_020 Hb_000671_020 Hb_034420_010--Hb_000671_020 Hb_000394_120 Hb_000394_120 Hb_034420_010--Hb_000394_120 Hb_001257_070--Hb_012395_040 Hb_005288_090 Hb_005288_090 Hb_001257_070--Hb_005288_090 Hb_008226_050 Hb_008226_050 Hb_001257_070--Hb_008226_050 Hb_005618_070 Hb_005618_070 Hb_001257_070--Hb_005618_070 Hb_072620_010 Hb_072620_010 Hb_001257_070--Hb_072620_010 Hb_000134_300--Hb_000802_070 Hb_000059_190 Hb_000059_190 Hb_000134_300--Hb_000059_190 Hb_003680_180 Hb_003680_180 Hb_000134_300--Hb_003680_180 Hb_002790_010 Hb_002790_010 Hb_000134_300--Hb_002790_010 Hb_004774_080 Hb_004774_080 Hb_000134_300--Hb_004774_080 Hb_000116_050 Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_012395_040--Hb_001279_110 Hb_012395_040--Hb_005618_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_012395_040--Hb_005288_090 Hb_000802_070--Hb_000059_190 Hb_000802_070--Hb_003680_180 Hb_000802_070--Hb_002790_010 Hb_000010_430 Hb_000010_430 Hb_000802_070--Hb_000010_430 Hb_000261_550 Hb_000261_550 Hb_000671_020--Hb_000261_550 Hb_000671_020--Hb_072620_010 Hb_000671_020--Hb_012395_040 Hb_000671_020--Hb_000116_050 Hb_009113_060 Hb_009113_060 Hb_000671_020--Hb_009113_060 Hb_000675_130 Hb_000675_130 Hb_000394_120--Hb_000675_130 Hb_001123_180 Hb_001123_180 Hb_000394_120--Hb_001123_180 Hb_003641_040 Hb_003641_040 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_000394_120--Hb_008226_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.3244 2.83956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103577 0.37435

CAGE analysis