Hb_009113_060

Information

Type -
Description -
Location Contig9113: 45860-47990
Sequence    

Annotation

kegg
ID rcu:RCOM_0528940
description hypothetical protein
nr
ID XP_002525387.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62143: 45938-47351 , PASA_asmbl_62144: 45938-47351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009113_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000116_050 0.0486746137 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
3 Hb_012395_040 0.067244816 - - conserved hypothetical protein [Ricinus communis]
4 Hb_016898_020 0.0683369479 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
5 Hb_001279_110 0.0684972882 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
6 Hb_000480_060 0.0688294948 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
7 Hb_000060_030 0.0706534095 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
8 Hb_001307_150 0.073753704 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_001998_180 0.0837659295 - - actin binding protein, putative [Ricinus communis]
10 Hb_000856_390 0.0840267726 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003776_050 0.0844077385 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
12 Hb_005398_050 0.0893853394 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
13 Hb_181744_010 0.0897404585 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_002928_150 0.0897567384 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_080952_060 0.0901133933 - - PREDICTED: patellin-4 [Populus euphratica]
16 Hb_007245_030 0.0906410309 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000614_200 0.0916269546 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
18 Hb_003368_070 0.0925685801 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
19 Hb_000671_020 0.093329693 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
20 Hb_119044_040 0.0937383094 - - cyclin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_009113_060 Hb_009113_060 Hb_000116_050 Hb_000116_050 Hb_009113_060--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_009113_060--Hb_012395_040 Hb_016898_020 Hb_016898_020 Hb_009113_060--Hb_016898_020 Hb_001279_110 Hb_001279_110 Hb_009113_060--Hb_001279_110 Hb_000480_060 Hb_000480_060 Hb_009113_060--Hb_000480_060 Hb_000060_030 Hb_000060_030 Hb_009113_060--Hb_000060_030 Hb_000116_050--Hb_000060_030 Hb_000116_050--Hb_012395_040 Hb_000116_050--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_000116_050--Hb_001998_180 Hb_002928_150 Hb_002928_150 Hb_000116_050--Hb_002928_150 Hb_012395_040--Hb_001279_110 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_012395_040--Hb_000060_030 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090 Hb_001307_150 Hb_001307_150 Hb_016898_020--Hb_001307_150 Hb_000856_390 Hb_000856_390 Hb_016898_020--Hb_000856_390 Hb_016898_020--Hb_000480_060 Hb_016898_020--Hb_000116_050 Hb_000317_120 Hb_000317_120 Hb_016898_020--Hb_000317_120 Hb_001279_110--Hb_000060_030 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_003776_050 Hb_003776_050 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_000480_060--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000345_450 Hb_000345_450 Hb_000480_060--Hb_000345_450 Hb_000085_360 Hb_000085_360 Hb_000480_060--Hb_000085_360 Hb_000060_030--Hb_001998_180 Hb_000060_030--Hb_003776_050 Hb_000060_030--Hb_002928_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0876986 6.89148 3.73893 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.038176 0.450551 0.467857

CAGE analysis