Hb_000317_120

Information

Type -
Description -
Location Contig317: 86620-87969
Sequence    

Annotation

kegg
ID rcu:RCOM_1176400
description hypothetical protein
nr
ID XP_012088359.1
description PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25849 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33364: 87850-88019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_120 0.0 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
2 Hb_001950_090 0.0770045858 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
3 Hb_000856_390 0.0774132768 - - conserved hypothetical protein [Ricinus communis]
4 Hb_016898_020 0.0827220076 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
5 Hb_012150_040 0.0835343087 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000576_140 0.0837545433 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
7 Hb_003106_090 0.0882625963 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
8 Hb_101133_050 0.0886896044 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
9 Hb_001307_150 0.0895862014 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_006810_040 0.093040498 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_003847_060 0.0938315264 - - syntaxin, putative [Ricinus communis]
12 Hb_000345_450 0.0951327734 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
13 Hb_007474_020 0.0980233836 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_000480_060 0.1000032231 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
15 Hb_001699_270 0.1002687225 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
16 Hb_005332_030 0.1004027688 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000661_150 0.1005392037 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
18 Hb_000038_070 0.1051960662 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004531_060 0.1063582383 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
20 Hb_005398_050 0.1077272457 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_120 Hb_000317_120 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000856_390 Hb_000856_390 Hb_000317_120--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_000317_120--Hb_016898_020 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090 Hb_003847_060 Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_001307_150 Hb_001307_150 Hb_000856_390--Hb_001307_150 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000480_060 Hb_000480_060 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_016898_020--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_001377_370 Hb_001377_370 Hb_012150_040--Hb_001377_370 Hb_101133_050 Hb_101133_050 Hb_012150_040--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_012150_040--Hb_000661_150 Hb_000742_180 Hb_000742_180 Hb_012150_040--Hb_000742_180 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_000576_140--Hb_000742_180 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_000576_140--Hb_003106_090 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_003106_090--Hb_000085_360 Hb_003106_090--Hb_000038_070 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_003106_090--Hb_000856_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0347364 1.03283 16.6197 11.7579 0.0755155 0.0316274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0705841 0 0.103874 1.94238 1.27181

CAGE analysis