Hb_000345_450

Information

Type -
Description -
Location Contig345: 370013-371791
Sequence    

Annotation

kegg
ID rcu:RCOM_1431470
description hypothetical protein
nr
ID XP_012089063.1
description PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
swissprot
ID Q84M91
description Probable microtubule-binding protein TANGLED OS=Arabidopsis thaliana GN=TAN PE=2 SV=1
trembl
ID A0A067JVF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23352 PE=4 SV=1
Gene Ontology
ID GO:0005875
description probable microtubule-binding protein tangled

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_450 0.0 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
2 Hb_000480_060 0.0704256647 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
3 Hb_000701_020 0.0711846562 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
4 Hb_001307_150 0.072823147 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_001950_090 0.0734310617 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
6 Hb_001699_270 0.07773099 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
7 Hb_006588_100 0.0833720729 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000856_390 0.0905205171 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000085_360 0.090892042 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
10 Hb_001998_180 0.0909764824 - - actin binding protein, putative [Ricinus communis]
11 Hb_101133_050 0.0914955523 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
12 Hb_080952_060 0.092223859 - - PREDICTED: patellin-4 [Populus euphratica]
13 Hb_016898_020 0.0925298889 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
14 Hb_003847_060 0.0950630398 - - syntaxin, putative [Ricinus communis]
15 Hb_000317_120 0.0951327734 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
16 Hb_000116_050 0.0951979837 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
17 Hb_005398_050 0.0972613963 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
18 Hb_003106_090 0.0981719721 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_000538_290 0.0998230152 - - hypothetical protein RCOM_0303940 [Ricinus communis]
20 Hb_005542_150 0.1001094098 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_450 Hb_000345_450 Hb_000480_060 Hb_000480_060 Hb_000345_450--Hb_000480_060 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_001307_150 Hb_001307_150 Hb_000345_450--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_000345_450--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_000345_450--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000345_450--Hb_006588_100 Hb_000480_060--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_000480_060--Hb_001699_270 Hb_000480_060--Hb_006588_100 Hb_000085_360 Hb_000085_360 Hb_000480_060--Hb_000085_360 Hb_002686_320 Hb_002686_320 Hb_000701_020--Hb_002686_320 Hb_000538_290 Hb_000538_290 Hb_000701_020--Hb_000538_290 Hb_000701_020--Hb_006588_100 Hb_000977_190 Hb_000977_190 Hb_000701_020--Hb_000977_190 Hb_000671_020 Hb_000671_020 Hb_000701_020--Hb_000671_020 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_001699_270 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_001950_090--Hb_006588_100 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001699_270--Hb_003847_060 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_006588_100--Hb_001699_270 Hb_000140_200 Hb_000140_200 Hb_006588_100--Hb_000140_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.046866 0.3217 22.2969 15.0105 0.0146331 0.0753995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249424 0.0280308 0 2.51051 1.57526

CAGE analysis