Hb_001950_090

Information

Type -
Description -
Location Contig1950: 54632-57021
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18580g
description POPTRDRAFT_208732; hypothetical protein
nr
ID XP_012079308.1
description PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
swissprot
ID Q9FGQ6
description Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana GN=EB1C PE=1 SV=1
trembl
ID A0A067KJI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12455 PE=4 SV=1
Gene Ontology
ID GO:0005618
description microtubule-associated protein rp eb family member 1c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19462: 54353-56990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_090 0.0 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
2 Hb_003847_060 0.0696616209 - - syntaxin, putative [Ricinus communis]
3 Hb_001699_270 0.0706999651 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
4 Hb_000345_450 0.0734310617 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
5 Hb_000317_120 0.0770045858 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
6 Hb_000069_650 0.079455965 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006588_100 0.0813919331 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001307_150 0.0820021791 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_003656_080 0.0865281092 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
10 Hb_000856_390 0.0886380783 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006810_040 0.0906699692 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_000661_150 0.0914208134 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
13 Hb_000480_060 0.0923291726 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_005398_050 0.0924540371 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
15 Hb_000538_290 0.0981801318 - - hypothetical protein RCOM_0303940 [Ricinus communis]
16 Hb_005332_030 0.100274477 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002686_320 0.1003028394 - - syntaxin, putative [Ricinus communis]
18 Hb_003106_090 0.1004890489 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_089140_070 0.1010121489 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
20 Hb_004531_060 0.101562912 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001950_090 Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100 Hb_005398_050 Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001699_270--Hb_001307_150 Hb_001699_270--Hb_000480_060 Hb_001699_270--Hb_000345_450 Hb_000345_450--Hb_000480_060 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_000345_450--Hb_001307_150 Hb_000345_450--Hb_006588_100 Hb_000317_120--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_000317_120--Hb_016898_020 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090 Hb_001377_370 Hb_001377_370 Hb_000069_650--Hb_001377_370 Hb_000069_650--Hb_003847_060 Hb_001390_040 Hb_001390_040 Hb_000069_650--Hb_001390_040 Hb_072201_010 Hb_072201_010 Hb_000069_650--Hb_072201_010 Hb_001565_090 Hb_001565_090 Hb_000069_650--Hb_001565_090 Hb_006588_100--Hb_000480_060 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_006588_100--Hb_001699_270 Hb_000140_200 Hb_000140_200 Hb_006588_100--Hb_000140_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147721 0.683354 18.6239 15.2384 0.0516026 0.0315343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0819581 0.0322346 0 2.45382 1.0002

CAGE analysis