Hb_003106_090

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig3106: 51189-54200
Sequence    

Annotation

kegg
ID rcu:RCOM_1512740
description E2F, putative
nr
ID XP_002511465.1
description E2F, putative [Ricinus communis]
swissprot
ID Q8LSZ4
description E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1
trembl
ID B9R8Z0
description E2F, putative OS=Ricinus communis GN=RCOM_1512740 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e2f transcription factor-like e2fe isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32876: 51687-52222 , PASA_asmbl_32877: 52571-52765 , PASA_asmbl_32878: 52773-54471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_090 0.0 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
2 Hb_005276_090 0.0759838525 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
3 Hb_000085_360 0.0767384307 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
4 Hb_000038_070 0.0780285113 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005542_150 0.0862856059 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
6 Hb_000317_120 0.0882625963 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
7 Hb_000856_390 0.0887682634 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000576_140 0.0904517893 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
9 Hb_000480_060 0.0904522553 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
10 Hb_101133_050 0.0907072792 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
11 Hb_001454_270 0.0923550913 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
12 Hb_001307_150 0.0976818207 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000345_450 0.0981719721 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
14 Hb_181744_010 0.0996972955 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
15 Hb_001950_090 0.1004890489 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
16 Hb_016898_020 0.1019460745 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
17 Hb_001998_180 0.1033158744 - - actin binding protein, putative [Ricinus communis]
18 Hb_033041_010 0.1074310551 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
19 Hb_005116_120 0.1075921541 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_000030_080 0.1085144817 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_090 Hb_003106_090 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_000085_360 Hb_000085_360 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390 Hb_005276_090--Hb_000085_360 Hb_000480_060 Hb_000480_060 Hb_005276_090--Hb_000480_060 Hb_119044_040 Hb_119044_040 Hb_005276_090--Hb_119044_040 Hb_002374_090 Hb_002374_090 Hb_005276_090--Hb_002374_090 Hb_003776_050 Hb_003776_050 Hb_005276_090--Hb_003776_050 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_011849_010 Hb_011849_010 Hb_000038_070--Hb_011849_010 Hb_000038_070--Hb_000856_390 Hb_000038_070--Hb_002374_090 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_001999_160 Hb_001999_160 Hb_005542_150--Hb_001999_160 Hb_000345_450 Hb_000345_450 Hb_005542_150--Hb_000345_450 Hb_033041_010 Hb_033041_010 Hb_005542_150--Hb_033041_010 Hb_005542_150--Hb_000085_360 Hb_101133_050 Hb_101133_050 Hb_005542_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000317_120--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_000317_120--Hb_016898_020 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_001307_150 Hb_001307_150 Hb_000856_390--Hb_001307_150 Hb_000856_390--Hb_016898_020 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000856_390--Hb_000480_060 Hb_000856_390--Hb_000085_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0316557 0.425857 9.65591 5.64506 0.0306901 0.0463746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0568074 0 1.41985 0.8863

CAGE analysis