Hb_002374_090

Information

Type -
Description -
Location Contig2374: 84635-88328
Sequence    

Annotation

kegg
ID rcu:RCOM_0562930
description cyclin A, putative
nr
ID XP_012078272.1
description PREDICTED: cyclin-A1-1 [Jatropha curcas]
swissprot
ID Q9C6Y3
description Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1
trembl
ID A0A067KCU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12115 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-a1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24849: 86632-88346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_090 0.0 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
2 Hb_011849_010 0.0581806866 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
3 Hb_000614_200 0.0589944265 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
4 Hb_119044_040 0.0701057937 - - cyclin B, putative [Ricinus communis]
5 Hb_003776_050 0.0710735423 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
6 Hb_000038_070 0.0725541835 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000316_070 0.0750387055 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
8 Hb_005276_090 0.0770121166 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
9 Hb_000085_360 0.078764216 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
10 Hb_000028_530 0.0863404292 - - Protein regulator of cytokinesis, putative [Ricinus communis]
11 Hb_002686_070 0.087373057 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004635_020 0.0885127132 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_001279_110 0.0896491429 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
14 Hb_001699_070 0.0910719494 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000060_030 0.0919463046 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
16 Hb_007245_030 0.092199704 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001969_120 0.0922141112 - - PREDICTED: plectin [Jatropha curcas]
18 Hb_181744_010 0.0926528487 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
19 Hb_000856_390 0.0927843467 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001998_180 0.0928971734 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_090 Hb_002374_090 Hb_011849_010 Hb_011849_010 Hb_002374_090--Hb_011849_010 Hb_000614_200 Hb_000614_200 Hb_002374_090--Hb_000614_200 Hb_119044_040 Hb_119044_040 Hb_002374_090--Hb_119044_040 Hb_003776_050 Hb_003776_050 Hb_002374_090--Hb_003776_050 Hb_000038_070 Hb_000038_070 Hb_002374_090--Hb_000038_070 Hb_000316_070 Hb_000316_070 Hb_002374_090--Hb_000316_070 Hb_011849_010--Hb_000614_200 Hb_011849_010--Hb_003776_050 Hb_011849_010--Hb_000038_070 Hb_011849_010--Hb_119044_040 Hb_011849_010--Hb_000316_070 Hb_000614_200--Hb_003776_050 Hb_007245_030 Hb_007245_030 Hb_000614_200--Hb_007245_030 Hb_000614_200--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_000614_200--Hb_003398_050 Hb_119044_040--Hb_003776_050 Hb_001279_110 Hb_001279_110 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_000038_070--Hb_000085_360 Hb_000856_390 Hb_000856_390 Hb_000038_070--Hb_000856_390 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_003106_090 Hb_003106_090 Hb_000038_070--Hb_003106_090 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_000316_070--Hb_007245_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0213808 0.392292 10.8309 4.03939 0.0200174 0.00935936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0191254 0.0724 0.974588 0.605046

CAGE analysis