Hb_003398_050

Information

Type -
Description -
Location Contig3398: 121770-124720
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20960g
description POPTRDRAFT_833809; B-type cell cycle switch protein ccs52B
nr
ID XP_002315217.2
description B-type cell cycle switch protein ccs52B [Populus trichocarpa]
swissprot
ID Q8LPL5
description Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1
trembl
ID B9HTH1
description B-type cell cycle switch protein ccs52B OS=Populus trichocarpa GN=POPTR_0010s20960g PE=4 SV=2
Gene Ontology
ID GO:0000911
description protein fizzy-related 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35451: 121821-122233 , PASA_asmbl_35452: 122255-124537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_050 0.0 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
2 Hb_002928_150 0.0344407233 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
3 Hb_001220_020 0.04022693 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
4 Hb_003776_050 0.0460542193 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
5 Hb_004032_390 0.0497034337 - - CDK, putative [Ricinus communis]
6 Hb_004174_030 0.0545802038 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
7 Hb_005914_100 0.0552696564 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004097_030 0.0556991185 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
9 Hb_001969_120 0.057924613 - - PREDICTED: plectin [Jatropha curcas]
10 Hb_119044_040 0.0621922103 - - cyclin B, putative [Ricinus communis]
11 Hb_000614_200 0.0659284351 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
12 Hb_001699_070 0.068114301 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003018_210 0.0683201936 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
14 Hb_162378_020 0.0695418191 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
15 Hb_001279_110 0.0705920247 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
16 Hb_000060_030 0.0729575967 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
17 Hb_005618_070 0.0744329823 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
18 Hb_007245_030 0.0754943808 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011849_010 0.0762970112 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
20 Hb_000035_190 0.0811091485 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003398_050 Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003398_050--Hb_002928_150 Hb_001220_020 Hb_001220_020 Hb_003398_050--Hb_001220_020 Hb_003776_050 Hb_003776_050 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_002928_150--Hb_003776_050 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_002928_150--Hb_001220_020 Hb_002928_150--Hb_004174_030 Hb_001220_020--Hb_004032_390 Hb_162378_020 Hb_162378_020 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_119044_040 Hb_119044_040 Hb_003776_050--Hb_119044_040 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_004032_390--Hb_162378_020 Hb_004032_390--Hb_003776_050 Hb_004032_390--Hb_002928_150 Hb_004032_390--Hb_004174_030 Hb_004174_030--Hb_004097_030 Hb_003018_210 Hb_003018_210 Hb_004174_030--Hb_003018_210 Hb_004174_030--Hb_005914_100 Hb_005914_100--Hb_004097_030 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120581 0.498342 56.3517 19.1807 0.0546016 0.0201497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0388916 2.8872 2.0364

CAGE analysis