Hb_001220_020

Information

Type -
Description -
Location Contig1220: 34831-37642
Sequence    

Annotation

kegg
ID rcu:RCOM_0848330
description Systemin receptor SR160 precursor, putative (EC:1.3.1.74)
nr
ID XP_012089771.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
swissprot
ID Q9SCT4
description Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1
trembl
ID A0A067JFZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00413 PE=4 SV=1
Gene Ontology
ID GO:0009505
description inflorescence meristem receptor-like kinase 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06682: 34737-37644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001220_020 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
2 Hb_003398_050 0.04022693 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
3 Hb_004032_390 0.0452206077 - - CDK, putative [Ricinus communis]
4 Hb_162378_020 0.0501053323 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
5 Hb_004174_030 0.0537082004 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
6 Hb_002928_150 0.0540716957 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
7 Hb_001235_040 0.0662892737 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
8 Hb_003776_050 0.0679115821 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
9 Hb_004097_030 0.0680535493 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
10 Hb_064396_010 0.0704625468 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_003018_210 0.0712595494 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
12 Hb_005914_100 0.0722280669 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000614_200 0.0737860343 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
14 Hb_119044_040 0.0737896628 - - cyclin B, putative [Ricinus communis]
15 Hb_001969_120 0.0754871161 - - PREDICTED: plectin [Jatropha curcas]
16 Hb_000032_080 0.0756356319 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
17 Hb_002686_070 0.076369288 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011849_010 0.076993392 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
19 Hb_011063_030 0.0788257929 - - protein with unknown function [Ricinus communis]
20 Hb_001564_100 0.0797465061 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]

Gene co-expression network

sample Hb_001220_020 Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_004032_390 Hb_004032_390 Hb_001220_020--Hb_004032_390 Hb_162378_020 Hb_162378_020 Hb_001220_020--Hb_162378_020 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_003398_050--Hb_002928_150 Hb_003776_050 Hb_003776_050 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004032_390 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_004032_390--Hb_162378_020 Hb_004032_390--Hb_003776_050 Hb_004032_390--Hb_002928_150 Hb_004032_390--Hb_004174_030 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_004097_030 Hb_004097_030 Hb_004174_030--Hb_004097_030 Hb_003018_210 Hb_003018_210 Hb_004174_030--Hb_003018_210 Hb_004174_030--Hb_005914_100 Hb_004174_030--Hb_002928_150 Hb_002928_150--Hb_003776_050 Hb_002928_150--Hb_005914_100 Hb_002928_150--Hb_004097_030 Hb_006788_130 Hb_006788_130 Hb_001235_040--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001235_040--Hb_000084_230 Hb_001235_040--Hb_011063_030 Hb_001235_040--Hb_162378_020 Hb_001564_100 Hb_001564_100 Hb_001235_040--Hb_001564_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0368688 0.38291 34.4351 10.1026 0 0.00690455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0167312 0 0 1.77172 1.23272

CAGE analysis