Hb_003776_050

Information

Type -
Description -
Location Contig3776: 73628-75612
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12250g
description POPTRDRAFT_825983; hypothetical protein
nr
ID XP_012081107.1
description PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38415: 73521-74484 , PASA_asmbl_38416: 74583-75811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003776_050 0.0 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
2 Hb_001969_120 0.0434354805 - - PREDICTED: plectin [Jatropha curcas]
3 Hb_119044_040 0.0445645387 - - cyclin B, putative [Ricinus communis]
4 Hb_003398_050 0.0460542193 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
5 Hb_000614_200 0.0461023646 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
6 Hb_002928_150 0.0468654916 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
7 Hb_000060_030 0.053478954 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
8 Hb_001279_110 0.0540634456 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
9 Hb_011849_010 0.0558704328 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
10 Hb_004032_390 0.0567434867 - - CDK, putative [Ricinus communis]
11 Hb_080952_060 0.0599542956 - - PREDICTED: patellin-4 [Populus euphratica]
12 Hb_001998_180 0.0674025667 - - actin binding protein, putative [Ricinus communis]
13 Hb_001220_020 0.0679115821 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
14 Hb_001699_070 0.0687636375 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002374_090 0.0710735423 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
16 Hb_000116_050 0.0714095323 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
17 Hb_005618_070 0.072582809 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
18 Hb_007245_030 0.0726368666 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005914_100 0.0762473498 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000085_360 0.0765039274 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]

Gene co-expression network

sample Hb_003776_050 Hb_003776_050 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_119044_040 Hb_119044_040 Hb_003776_050--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_001969_120--Hb_005618_070 Hb_001969_120--Hb_003398_050 Hb_001279_110 Hb_001279_110 Hb_001969_120--Hb_001279_110 Hb_001969_120--Hb_119044_040 Hb_001969_120--Hb_002928_150 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_003398_050--Hb_002928_150 Hb_001220_020 Hb_001220_020 Hb_003398_050--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_000614_200--Hb_011849_010 Hb_007245_030 Hb_007245_030 Hb_000614_200--Hb_007245_030 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_000614_200--Hb_119044_040 Hb_000614_200--Hb_003398_050 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_002928_150--Hb_001220_020 Hb_002928_150--Hb_004174_030 Hb_000116_050 Hb_000116_050 Hb_000060_030--Hb_000116_050 Hb_000060_030--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_000060_030--Hb_001998_180 Hb_000060_030--Hb_002928_150 Hb_012395_040 Hb_012395_040 Hb_000060_030--Hb_012395_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523019 0.275502 23.6457 9.05378 0.0115449 0.0608392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0220789 0.0416223 1.57562 1.15903

CAGE analysis