Hb_001969_120

Information

Type -
Description -
Location Contig1969: 149350-152633
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05730g
description POPTRDRAFT_645891; hypothetical protein
nr
ID XP_012073274.1
description PREDICTED: plectin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06214 PE=4 SV=1
Gene Ontology
ID GO:0000226
description fk506-binding protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19747: 149300-150060 , PASA_asmbl_19748: 150113-151710 , PASA_asmbl_19749: 151827-152642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_120 0.0 - - PREDICTED: plectin [Jatropha curcas]
2 Hb_003776_050 0.0434354805 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
3 Hb_005618_070 0.044690312 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
4 Hb_003398_050 0.057924613 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
5 Hb_001279_110 0.0583540487 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
6 Hb_119044_040 0.0583737134 - - cyclin B, putative [Ricinus communis]
7 Hb_002928_150 0.0604637088 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
8 Hb_000060_030 0.0650778222 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
9 Hb_012395_040 0.0726169164 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_390 0.0746630347 - - CDK, putative [Ricinus communis]
11 Hb_001220_020 0.0754871161 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
12 Hb_011849_010 0.0757496545 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
13 Hb_080952_060 0.0758615023 - - PREDICTED: patellin-4 [Populus euphratica]
14 Hb_000614_200 0.0799809218 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
15 Hb_000116_050 0.0834685767 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
16 Hb_001998_180 0.0846157866 - - actin binding protein, putative [Ricinus communis]
17 Hb_001541_140 0.0850016892 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
18 Hb_005288_090 0.0874408686 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
19 Hb_006520_030 0.0876863145 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
20 Hb_000085_360 0.0900347677 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]

Gene co-expression network

sample Hb_001969_120 Hb_001969_120 Hb_003776_050 Hb_003776_050 Hb_001969_120--Hb_003776_050 Hb_005618_070 Hb_005618_070 Hb_001969_120--Hb_005618_070 Hb_003398_050 Hb_003398_050 Hb_001969_120--Hb_003398_050 Hb_001279_110 Hb_001279_110 Hb_001969_120--Hb_001279_110 Hb_119044_040 Hb_119044_040 Hb_001969_120--Hb_119044_040 Hb_002928_150 Hb_002928_150 Hb_001969_120--Hb_002928_150 Hb_003776_050--Hb_119044_040 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_012395_040 Hb_012395_040 Hb_005618_070--Hb_012395_040 Hb_005618_070--Hb_001279_110 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_005288_090 Hb_005288_090 Hb_005618_070--Hb_005288_090 Hb_003398_050--Hb_002928_150 Hb_001220_020 Hb_001220_020 Hb_003398_050--Hb_001220_020 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_002928_150--Hb_001220_020 Hb_002928_150--Hb_004174_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106906 0.117171 19.2643 6.8689 0.00820526 0.038994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0297898 1.29493 1.26191

CAGE analysis