Hb_001279_110

Information

Type -
Description -
Location Contig1279: 131192-134109
Sequence    

Annotation

kegg
ID rcu:RCOM_0530870
description hypothetical protein
nr
ID XP_012071332.1
description PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067LGA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10193 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08585: 131274-131879 , PASA_asmbl_08586: 131961-132281 , PASA_asmbl_08587: 132285-132623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_110 0.0 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
2 Hb_000060_030 0.0432382277 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
3 Hb_000116_050 0.0485608683 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
4 Hb_119044_040 0.0507398038 - - cyclin B, putative [Ricinus communis]
5 Hb_012395_040 0.0508290721 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003776_050 0.0540634456 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
7 Hb_002928_150 0.0571232819 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
8 Hb_005618_070 0.0577312503 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
9 Hb_001969_120 0.0583540487 - - PREDICTED: plectin [Jatropha curcas]
10 Hb_181744_010 0.0627540351 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_011849_010 0.0630944747 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
12 Hb_000085_360 0.0631484973 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
13 Hb_001998_180 0.0665471881 - - actin binding protein, putative [Ricinus communis]
14 Hb_009113_060 0.0684972882 - - conserved hypothetical protein [Ricinus communis]
15 Hb_080952_060 0.0686575121 - - PREDICTED: patellin-4 [Populus euphratica]
16 Hb_003398_050 0.0705920247 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
17 Hb_001541_140 0.0730650313 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
18 Hb_004631_040 0.0737300045 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
19 Hb_000614_200 0.0748666437 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
20 Hb_000038_070 0.0802857277 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001279_110 Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_003776_050 Hb_003776_050 Hb_001279_110--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_001279_110--Hb_002928_150 Hb_000060_030--Hb_000116_050 Hb_001998_180 Hb_001998_180 Hb_000060_030--Hb_001998_180 Hb_000060_030--Hb_003776_050 Hb_000060_030--Hb_002928_150 Hb_000060_030--Hb_012395_040 Hb_000116_050--Hb_012395_040 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_000116_050--Hb_001998_180 Hb_000116_050--Hb_002928_150 Hb_119044_040--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090 Hb_003776_050--Hb_001969_120 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_002928_150--Hb_003398_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152094 0.0993183 9.16048 3.93022 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.72554 0.598702

CAGE analysis