Hb_000060_030

Information

Type -
Description -
Location Contig60: 46718-47620
Sequence    

Annotation

kegg
ID rcu:RCOM_1252060
description Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012091846.1
description PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
swissprot
ID Q9PTJ6
description CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2
trembl
ID A0A067JMC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21621 PE=4 SV=1
Gene Ontology
ID GO:0004721
description carboxy-terminal domain rna polymerase ii polypeptide a small phosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_030 0.0 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
2 Hb_000116_050 0.0356346269 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
3 Hb_001279_110 0.0432382277 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
4 Hb_001998_180 0.0500892727 - - actin binding protein, putative [Ricinus communis]
5 Hb_003776_050 0.053478954 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
6 Hb_002928_150 0.0566835756 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
7 Hb_012395_040 0.0615484486 - - conserved hypothetical protein [Ricinus communis]
8 Hb_119044_040 0.0623882927 - - cyclin B, putative [Ricinus communis]
9 Hb_001969_120 0.0650778222 - - PREDICTED: plectin [Jatropha curcas]
10 Hb_009113_060 0.0706534095 - - conserved hypothetical protein [Ricinus communis]
11 Hb_080952_060 0.0710562741 - - PREDICTED: patellin-4 [Populus euphratica]
12 Hb_005288_090 0.0711803433 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
13 Hb_181744_010 0.072637907 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_003398_050 0.0729575967 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
15 Hb_000085_360 0.0741175684 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
16 Hb_000614_200 0.0749307614 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
17 Hb_011849_010 0.0754981868 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
18 Hb_005618_070 0.0763286415 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
19 Hb_007245_030 0.0791017723 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_550 0.0833806383 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000060_030 Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_000060_030--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_000060_030--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_000060_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_000060_030--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_000060_030--Hb_002928_150 Hb_012395_040 Hb_012395_040 Hb_000060_030--Hb_012395_040 Hb_000116_050--Hb_012395_040 Hb_000116_050--Hb_001279_110 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_000116_050--Hb_001998_180 Hb_000116_050--Hb_002928_150 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_080952_060 Hb_080952_060 Hb_001998_180--Hb_080952_060 Hb_001998_180--Hb_001279_110 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_002928_150--Hb_003398_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117772 11.5249 5.02115 0.02521 0.0221615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.859048 0.736019

CAGE analysis