Hb_002928_150

Information

Type -
Description -
Location Contig2928: 105439-108571
Sequence    

Annotation

kegg
ID rcu:RCOM_1601010
description cyclin B, putative
nr
ID XP_012073651.1
description PREDICTED: cyclin-B2-4-like [Jatropha curcas]
swissprot
ID Q9SFW6
description Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2
trembl
ID A0A067KP83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08084 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-b2-4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30699: 105437-108553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_150 0.0 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
2 Hb_003398_050 0.0344407233 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
3 Hb_003776_050 0.0468654916 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
4 Hb_005914_100 0.0475479813 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004097_030 0.0518043571 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
6 Hb_001220_020 0.0540716957 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_004174_030 0.0559721247 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
8 Hb_000060_030 0.0566835756 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
9 Hb_001279_110 0.0571232819 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
10 Hb_004032_390 0.0578081941 - - CDK, putative [Ricinus communis]
11 Hb_001969_120 0.0604637088 - - PREDICTED: plectin [Jatropha curcas]
12 Hb_012395_040 0.0632306793 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005618_070 0.0641350079 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
14 Hb_000116_050 0.0672775201 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
15 Hb_000614_200 0.0679459229 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
16 Hb_119044_040 0.0698773046 - - cyclin B, putative [Ricinus communis]
17 Hb_007245_030 0.0710112006 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011849_010 0.0747557326 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
19 Hb_080952_060 0.0750969951 - - PREDICTED: patellin-4 [Populus euphratica]
20 Hb_003368_070 0.0788159575 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]

Gene co-expression network

sample Hb_002928_150 Hb_002928_150 Hb_003398_050 Hb_003398_050 Hb_002928_150--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_002928_150--Hb_003776_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_003398_050--Hb_004174_030 Hb_003398_050--Hb_005914_100 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_119044_040 Hb_119044_040 Hb_003776_050--Hb_119044_040 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_005914_100--Hb_004097_030 Hb_005914_100--Hb_004174_030 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_056196_020 Hb_056196_020 Hb_005914_100--Hb_056196_020 Hb_004097_030--Hb_004174_030 Hb_004097_030--Hb_003398_050 Hb_004097_030--Hb_056196_020 Hb_003018_210 Hb_003018_210 Hb_004097_030--Hb_003018_210 Hb_001220_020--Hb_004032_390 Hb_162378_020 Hb_162378_020 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_004174_030--Hb_003018_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492493 0.472906 66.0702 24.7656 0.0353921 0.024298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0220485 0 3.18202 3.00946

CAGE analysis