Hb_004174_030

Information

Type -
Description -
Location Contig4174: 39013-41473
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19070g
description POPTRDRAFT_770157; leucine-rich repeat transmembrane protein kinase
nr
ID XP_011015296.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
swissprot
ID Q9SCT4
description Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1
trembl
ID B9HSI4
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0010s19070g PE=4 SV=2
Gene Ontology
ID GO:0004672
description receptor-like kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41293: 38855-40600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004174_030 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
2 Hb_004097_030 0.0372715971 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
3 Hb_003018_210 0.0502589518 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
4 Hb_005914_100 0.0522936162 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001220_020 0.0537082004 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_003398_050 0.0545802038 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
7 Hb_002928_150 0.0559721247 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
8 Hb_004032_390 0.0659301282 - - CDK, putative [Ricinus communis]
9 Hb_056196_020 0.0793803318 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
10 Hb_000084_230 0.0802329513 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
11 Hb_001699_070 0.0835506174 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003776_050 0.0836882122 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_000614_200 0.0847179012 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
14 Hb_007245_030 0.0868343764 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001564_100 0.0895391058 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_006788_130 0.0899939223 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
17 Hb_000035_190 0.0906062852 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002837_120 0.0908717771 - - PREDICTED: legumin A-like [Jatropha curcas]
19 Hb_162378_020 0.0916982024 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
20 Hb_001235_040 0.0925868309 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]

Gene co-expression network

sample Hb_004174_030 Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_004174_030--Hb_004097_030 Hb_003018_210 Hb_003018_210 Hb_004174_030--Hb_003018_210 Hb_005914_100 Hb_005914_100 Hb_004174_030--Hb_005914_100 Hb_001220_020 Hb_001220_020 Hb_004174_030--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_004174_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_004174_030--Hb_002928_150 Hb_004097_030--Hb_005914_100 Hb_004097_030--Hb_002928_150 Hb_004097_030--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_004097_030--Hb_056196_020 Hb_004097_030--Hb_003018_210 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003018_210--Hb_003398_050 Hb_003018_210--Hb_001220_020 Hb_005914_100--Hb_002928_150 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_005914_100--Hb_003398_050 Hb_005914_100--Hb_056196_020 Hb_001220_020--Hb_003398_050 Hb_004032_390 Hb_004032_390 Hb_001220_020--Hb_004032_390 Hb_162378_020 Hb_162378_020 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_003398_050--Hb_002928_150 Hb_003776_050 Hb_003776_050 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004032_390 Hb_002928_150--Hb_003776_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.196183 22.3353 7.6664 0 0.0071722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0186226 0 0 0.785854 0.528921

CAGE analysis