Hb_001699_070

Information

Type -
Description -
Location Contig1699: 63214-64984
Sequence    

Annotation

kegg
ID rcu:RCOM_0572620
description hypothetical protein
nr
ID XP_002529643.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD20
description Protein POLLENLESS 3-LIKE 2 OS=Arabidopsis thaliana GN=At3g51280 PE=2 SV=1
trembl
ID B9SUH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0572620 PE=4 SV=1
Gene Ontology
ID GO:0006270
description protein pollenless 3-like 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15790: 63183-65049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003368_070 0.0576615847 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
3 Hb_119044_040 0.0634400408 - - cyclin B, putative [Ricinus communis]
4 Hb_003018_210 0.0646873541 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
5 Hb_003398_050 0.068114301 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
6 Hb_003776_050 0.0687636375 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
7 Hb_000614_200 0.072624302 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
8 Hb_007245_030 0.0735092245 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_190 0.0740371733 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_390 0.0764392224 - - CDK, putative [Ricinus communis]
11 Hb_000890_140 0.0776406444 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
12 Hb_080952_060 0.0791591392 - - PREDICTED: patellin-4 [Populus euphratica]
13 Hb_000856_390 0.0807630806 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001168_030 0.080799483 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
15 Hb_002928_150 0.0811387796 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
16 Hb_004174_030 0.0835506174 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
17 Hb_005914_100 0.0850601826 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004097_030 0.0859071742 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
19 Hb_000060_030 0.0866485573 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
20 Hb_000316_070 0.0876912261 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]

Gene co-expression network

sample Hb_001699_070 Hb_001699_070 Hb_003368_070 Hb_003368_070 Hb_001699_070--Hb_003368_070 Hb_119044_040 Hb_119044_040 Hb_001699_070--Hb_119044_040 Hb_003018_210 Hb_003018_210 Hb_001699_070--Hb_003018_210 Hb_003398_050 Hb_003398_050 Hb_001699_070--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_001699_070--Hb_003776_050 Hb_000614_200 Hb_000614_200 Hb_001699_070--Hb_000614_200 Hb_000176_040 Hb_000176_040 Hb_003368_070--Hb_000176_040 Hb_000890_140 Hb_000890_140 Hb_003368_070--Hb_000890_140 Hb_002928_150 Hb_002928_150 Hb_003368_070--Hb_002928_150 Hb_001279_110 Hb_001279_110 Hb_003368_070--Hb_001279_110 Hb_003368_070--Hb_119044_040 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_004174_030 Hb_004174_030 Hb_003018_210--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_003018_210--Hb_004097_030 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_003018_210--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_003018_210--Hb_001220_020 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_000614_200--Hb_011849_010 Hb_007245_030 Hb_007245_030 Hb_000614_200--Hb_007245_030 Hb_002374_090 Hb_002374_090 Hb_000614_200--Hb_002374_090 Hb_000614_200--Hb_119044_040 Hb_000614_200--Hb_003398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0883123 0.591154 32.451 13.658 0.0809581 0.0391939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0310148 0 0.0458536 2.31784 0.663772

CAGE analysis