Hb_004631_040

Information

Type -
Description -
Location Contig4631: 35437-35847
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43850: 35374-36329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004631_040 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_119044_040 0.0565354923 - - cyclin B, putative [Ricinus communis]
3 Hb_000085_360 0.0599663203 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
4 Hb_004592_030 0.0650297487 - - unknown [Lotus japonicus]
5 Hb_004197_020 0.0716652486 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
6 Hb_001279_110 0.0737300045 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
7 Hb_002874_010 0.0739464335 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
8 Hb_007044_260 0.0749310622 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
9 Hb_001076_010 0.0783947178 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
10 Hb_005276_090 0.0819249177 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
11 Hb_000060_030 0.0855985873 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
12 Hb_000176_040 0.0864741504 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
13 Hb_003368_070 0.0881792574 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
14 Hb_003776_050 0.0889965748 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
15 Hb_000480_060 0.0890301583 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_002686_070 0.0920679149 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001699_070 0.0926696879 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011849_010 0.0945623937 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
19 Hb_080952_060 0.0968221528 - - PREDICTED: patellin-4 [Populus euphratica]
20 Hb_000358_010 0.0980449891 - - PREDICTED: basic blue protein [Populus euphratica]

Gene co-expression network

sample Hb_004631_040 Hb_004631_040 Hb_119044_040 Hb_119044_040 Hb_004631_040--Hb_119044_040 Hb_000085_360 Hb_000085_360 Hb_004631_040--Hb_000085_360 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_001279_110 Hb_001279_110 Hb_004631_040--Hb_001279_110 Hb_002874_010 Hb_002874_010 Hb_004631_040--Hb_002874_010 Hb_003776_050 Hb_003776_050 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_000085_360 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_004592_030--Hb_004197_020 Hb_003902_070 Hb_003902_070 Hb_004592_030--Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_004592_030--Hb_000030_080 Hb_000480_060 Hb_000480_060 Hb_004592_030--Hb_000480_060 Hb_004592_030--Hb_000085_360 Hb_000176_040 Hb_000176_040 Hb_004197_020--Hb_000176_040 Hb_004197_020--Hb_000030_080 Hb_004197_020--Hb_003902_070 Hb_004197_020--Hb_000480_060 Hb_000060_030 Hb_000060_030 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_001279_110--Hb_002928_150 Hb_001076_010 Hb_001076_010 Hb_002874_010--Hb_001076_010 Hb_000358_010 Hb_000358_010 Hb_002874_010--Hb_000358_010 Hb_007044_260 Hb_007044_260 Hb_002874_010--Hb_007044_260 Hb_002874_010--Hb_000085_360 Hb_002874_010--Hb_119044_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288036 1.68637 168.816 70.7092 0.0809152 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 23.8306 6.8545

CAGE analysis