Hb_007044_260

Information

Type -
Description -
Location Contig7044: 219332-225267
Sequence    

Annotation

kegg
ID rcu:RCOM_1727120
description ubiquitin-protein ligase, putative
nr
ID XP_012077942.1
description PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
swissprot
ID Q96GN5
description Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2
trembl
ID A0A067KM95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55041: 219304-219652 , PASA_asmbl_55042: 219680-221744 , PASA_asmbl_55045: 223241-223785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_260 0.0 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
2 Hb_000358_010 0.0631261449 - - PREDICTED: basic blue protein [Populus euphratica]
3 Hb_004631_040 0.0749310622 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_002874_010 0.0808161593 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
5 Hb_000032_080 0.0814175001 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
6 Hb_162378_020 0.0840090666 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
7 Hb_002686_070 0.085364795 - - conserved hypothetical protein [Ricinus communis]
8 Hb_119044_040 0.0868964999 - - cyclin B, putative [Ricinus communis]
9 Hb_011063_030 0.0894793746 - - protein with unknown function [Ricinus communis]
10 Hb_001076_010 0.0975379649 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
11 Hb_000085_360 0.0983983372 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_064396_010 0.1017894213 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_011849_010 0.1041936998 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
14 Hb_001769_150 0.1060932108 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
15 Hb_000227_020 0.1063101165 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
16 Hb_006316_090 0.1075627842 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_002374_090 0.1079418561 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
18 Hb_001969_120 0.1084694724 - - PREDICTED: plectin [Jatropha curcas]
19 Hb_000103_460 0.1089844577 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
20 Hb_010021_060 0.1092857467 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_260 Hb_007044_260 Hb_000358_010 Hb_000358_010 Hb_007044_260--Hb_000358_010 Hb_004631_040 Hb_004631_040 Hb_007044_260--Hb_004631_040 Hb_002874_010 Hb_002874_010 Hb_007044_260--Hb_002874_010 Hb_000032_080 Hb_000032_080 Hb_007044_260--Hb_000032_080 Hb_162378_020 Hb_162378_020 Hb_007044_260--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_007044_260--Hb_002686_070 Hb_006316_090 Hb_006316_090 Hb_000358_010--Hb_006316_090 Hb_001076_010 Hb_001076_010 Hb_000358_010--Hb_001076_010 Hb_000358_010--Hb_002874_010 Hb_001769_150 Hb_001769_150 Hb_000358_010--Hb_001769_150 Hb_000103_460 Hb_000103_460 Hb_000358_010--Hb_000103_460 Hb_119044_040 Hb_119044_040 Hb_004631_040--Hb_119044_040 Hb_000085_360 Hb_000085_360 Hb_004631_040--Hb_000085_360 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_001279_110 Hb_001279_110 Hb_004631_040--Hb_001279_110 Hb_004631_040--Hb_002874_010 Hb_002874_010--Hb_001076_010 Hb_002874_010--Hb_000085_360 Hb_002874_010--Hb_119044_040 Hb_000032_080--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_000032_080--Hb_011063_030 Hb_001220_020 Hb_001220_020 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_000032_080--Hb_002686_070 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_064396_010 Hb_162378_020--Hb_002686_070 Hb_002686_070--Hb_064396_010 Hb_002686_070--Hb_004032_390 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0362478 0.112193 10.9741 3.15785 0.0227337 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0144618 0 1.59119 0.522145

CAGE analysis