Hb_000032_080

Information

Type transcription factor
Description TF Family: HMG
Location Contig32: 59741-62092
Sequence    

Annotation

kegg
ID rcu:RCOM_1691260
description transcription factor, putative
nr
ID XP_002509934.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9T012
description High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13 PE=2 SV=1
trembl
ID B9RCQ0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1691260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_080 0.0 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
2 Hb_162378_020 0.0553185763 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
3 Hb_011063_030 0.0591012917 - - protein with unknown function [Ricinus communis]
4 Hb_001220_020 0.0756356319 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
5 Hb_064396_010 0.0761469801 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002686_070 0.0777459881 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007044_260 0.0814175001 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
8 Hb_004459_030 0.0864847359 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
9 Hb_000421_060 0.0865539218 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
10 Hb_011849_010 0.0887770571 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
11 Hb_004032_390 0.0888724747 - - CDK, putative [Ricinus communis]
12 Hb_001235_040 0.0895072874 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
13 Hb_001969_120 0.0911687168 - - PREDICTED: plectin [Jatropha curcas]
14 Hb_119044_040 0.0923801219 - - cyclin B, putative [Ricinus communis]
15 Hb_028903_010 0.0931839082 - - hypothetical protein JCGZ_09851 [Jatropha curcas]
16 Hb_003398_050 0.09592114 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
17 Hb_002473_030 0.0968336999 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
18 Hb_003776_050 0.0995617788 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
19 Hb_000227_020 0.1000059323 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
20 Hb_008406_150 0.1035863661 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_080 Hb_000032_080 Hb_162378_020 Hb_162378_020 Hb_000032_080--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_000032_080--Hb_011063_030 Hb_001220_020 Hb_001220_020 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_064396_010 Hb_162378_020--Hb_002686_070 Hb_001235_040 Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_001220_020 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001220_020--Hb_001235_040 Hb_064396_010--Hb_002686_070 Hb_064396_010--Hb_000227_020 Hb_064396_010--Hb_001220_020 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_000358_010 Hb_000358_010 Hb_007044_260--Hb_000358_010 Hb_004631_040 Hb_004631_040 Hb_007044_260--Hb_004631_040 Hb_002874_010 Hb_002874_010 Hb_007044_260--Hb_002874_010 Hb_007044_260--Hb_162378_020 Hb_007044_260--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0773082 0.356322 21.9393 5.09693 0 0.025587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.8413 1.16146

CAGE analysis