Hb_002874_010

Information

Type -
Description -
Location Contig2874: 5003-9277
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29060g
description replication family protein
nr
ID XP_012076323.1
description PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQ19
description Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana GN=RPA2A PE=1 SV=2
trembl
ID A0A067KEK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07009 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 32 kda subunit a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29974: 4794-9241
cDNA
(Sanger)
(ID:Location)		 024_I22.ab1: 4918-8690 , 029_E02.ab1: 5048-8686 , 042_O03.ab1: 5036-9241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_010 0.0 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
2 Hb_001076_010 0.0604281196 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
3 Hb_004631_040 0.0739464335 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_000358_010 0.0748377578 - - PREDICTED: basic blue protein [Populus euphratica]
5 Hb_007044_260 0.0808161593 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
6 Hb_000085_360 0.0902285745 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
7 Hb_119044_040 0.0987666488 - - cyclin B, putative [Ricinus communis]
8 Hb_006316_090 0.0989605601 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_002686_070 0.1005386409 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000103_460 0.1011602819 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
11 Hb_064396_010 0.1051685235 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000227_020 0.1062509558 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
13 Hb_005276_090 0.106315649 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_002374_090 0.1069940405 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
15 Hb_005306_030 0.1089690553 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
16 Hb_000189_350 0.1096092742 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
17 Hb_011849_010 0.1097187232 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
18 Hb_000038_070 0.1110275342 - - conserved hypothetical protein [Ricinus communis]
19 Hb_162378_020 0.1168627974 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
20 Hb_000030_080 0.118889372 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_010 Hb_002874_010 Hb_001076_010 Hb_001076_010 Hb_002874_010--Hb_001076_010 Hb_004631_040 Hb_004631_040 Hb_002874_010--Hb_004631_040 Hb_000358_010 Hb_000358_010 Hb_002874_010--Hb_000358_010 Hb_007044_260 Hb_007044_260 Hb_002874_010--Hb_007044_260 Hb_000085_360 Hb_000085_360 Hb_002874_010--Hb_000085_360 Hb_119044_040 Hb_119044_040 Hb_002874_010--Hb_119044_040 Hb_001076_010--Hb_000358_010 Hb_006316_090 Hb_006316_090 Hb_001076_010--Hb_006316_090 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_000103_460 Hb_000103_460 Hb_001076_010--Hb_000103_460 Hb_004631_040--Hb_119044_040 Hb_004631_040--Hb_000085_360 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_001279_110 Hb_001279_110 Hb_004631_040--Hb_001279_110 Hb_000358_010--Hb_007044_260 Hb_000358_010--Hb_006316_090 Hb_001769_150 Hb_001769_150 Hb_000358_010--Hb_001769_150 Hb_000358_010--Hb_000103_460 Hb_007044_260--Hb_004631_040 Hb_000032_080 Hb_000032_080 Hb_007044_260--Hb_000032_080 Hb_162378_020 Hb_162378_020 Hb_007044_260--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_007044_260--Hb_002686_070 Hb_000085_360--Hb_119044_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_003776_050 Hb_003776_050 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.076313 1.04728 32.0956 11.8981 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0459134 0 5.83341 1.02422

CAGE analysis