Hb_005276_090

Information

Type -
Description -
Location Contig5276: 74740-76494
Sequence    

Annotation

kegg
ID rcu:RCOM_0557930
description hypothetical protein
nr
ID XP_012092248.1
description PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21933 PE=4 SV=1
Gene Ontology
ID GO:1902589
description f-box wd repeat-containing 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47090: 74729-74950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_090 0.0 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
2 Hb_000085_360 0.06053726 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
3 Hb_000480_060 0.0716927749 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_003106_090 0.0759838525 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
5 Hb_119044_040 0.0767412115 - - cyclin B, putative [Ricinus communis]
6 Hb_002374_090 0.0770121166 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
7 Hb_003776_050 0.0812519437 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
8 Hb_004631_040 0.0819249177 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
9 Hb_080952_060 0.0828674711 - - PREDICTED: patellin-4 [Populus euphratica]
10 Hb_001307_150 0.0833824373 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001998_180 0.0837946415 - - actin binding protein, putative [Ricinus communis]
12 Hb_000856_390 0.0839599817 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000060_030 0.0864555378 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
14 Hb_101133_050 0.0887292991 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
15 Hb_011849_010 0.091367916 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
16 Hb_000038_070 0.0915494067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001279_110 0.0930335464 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
18 Hb_001699_070 0.0938578997 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000614_200 0.094548992 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
20 Hb_004635_020 0.09636804 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_005276_090 Hb_005276_090 Hb_000085_360 Hb_000085_360 Hb_005276_090--Hb_000085_360 Hb_000480_060 Hb_000480_060 Hb_005276_090--Hb_000480_060 Hb_003106_090 Hb_003106_090 Hb_005276_090--Hb_003106_090 Hb_119044_040 Hb_119044_040 Hb_005276_090--Hb_119044_040 Hb_002374_090 Hb_002374_090 Hb_005276_090--Hb_002374_090 Hb_003776_050 Hb_003776_050 Hb_005276_090--Hb_003776_050 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_000480_060--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_001699_270 Hb_001699_270 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000345_450 Hb_000345_450 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360 Hb_003106_090--Hb_000085_360 Hb_003106_090--Hb_000038_070 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_002374_090--Hb_011849_010 Hb_000614_200 Hb_000614_200 Hb_002374_090--Hb_000614_200 Hb_002374_090--Hb_119044_040 Hb_002374_090--Hb_003776_050 Hb_002374_090--Hb_000038_070 Hb_000316_070 Hb_000316_070 Hb_002374_090--Hb_000316_070 Hb_003776_050--Hb_001969_120 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_003776_050--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0410488 0.294999 15.2857 7.33987 0.0549461 0.0963754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0656587 0.0609964 1.93407 0.814213

CAGE analysis