Hb_000856_390

Information

Type -
Description -
Location Contig856: 350756-353338
Sequence    

Annotation

kegg
ID rcu:RCOM_1514190
description hypothetical protein
nr
ID XP_002511539.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R964
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1514190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60612: 350699-353350 , PASA_asmbl_60613: 351245-352088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_390 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001307_150 0.0497152993 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_016898_020 0.0617318288 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
4 Hb_000038_070 0.0660920801 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007245_030 0.0718629144 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000480_060 0.0729134097 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
7 Hb_000085_360 0.0737266595 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_000317_120 0.0774132768 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
9 Hb_003847_060 0.0792572445 - - syntaxin, putative [Ricinus communis]
10 Hb_001699_070 0.0807630806 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000890_140 0.0823623317 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
12 Hb_000116_050 0.0836056002 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
13 Hb_005276_090 0.0839599817 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_009113_060 0.0840267726 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004635_020 0.0846819998 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
16 Hb_119044_040 0.0873253898 - - cyclin B, putative [Ricinus communis]
17 Hb_080952_060 0.0875045821 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_001950_090 0.0886380783 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
19 Hb_003106_090 0.0887682634 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
20 Hb_000614_200 0.0888354396 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000856_390 Hb_000856_390 Hb_001307_150 Hb_001307_150 Hb_000856_390--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000480_060 Hb_000480_060 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_000317_120 Hb_000317_120 Hb_016898_020--Hb_000317_120 Hb_011849_010 Hb_011849_010 Hb_000038_070--Hb_011849_010 Hb_000038_070--Hb_000085_360 Hb_002374_090 Hb_002374_090 Hb_000038_070--Hb_002374_090 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_003106_090 Hb_003106_090 Hb_000038_070--Hb_003106_090 Hb_005914_100 Hb_005914_100 Hb_007245_030--Hb_005914_100 Hb_000614_200 Hb_000614_200 Hb_007245_030--Hb_000614_200 Hb_001168_030 Hb_001168_030 Hb_007245_030--Hb_001168_030 Hb_000316_070 Hb_000316_070 Hb_007245_030--Hb_000316_070 Hb_002928_150 Hb_002928_150 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160 Hb_000480_060--Hb_009113_060 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360 Hb_119044_040 Hb_119044_040 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.521917 3.22597 86.9254 48.8068 0.101397 0.137326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0345724 0 0.101835 7.39166 4.25088

CAGE analysis