Hb_016898_020

Information

Type transcription factor
Description TF Family: SET
Location Contig16898: 29712-31343
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08900g
description POPTRDRAFT_765766; SET domain-containing family protein
nr
ID XP_011017607.1
description PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
swissprot
ID Q9CWR2
description Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1
trembl
ID B9HI95
description SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s08900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016898_020 0.0 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
2 Hb_001307_150 0.05895469 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000856_390 0.0617318288 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009113_060 0.0683369479 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000480_060 0.0799417724 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
6 Hb_000116_050 0.0806902422 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
7 Hb_000317_120 0.0827220076 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
8 Hb_005398_050 0.0877207486 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
9 Hb_101133_050 0.0880944944 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
10 Hb_003847_060 0.0898301306 - - syntaxin, putative [Ricinus communis]
11 Hb_000576_140 0.0909517825 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
12 Hb_000345_450 0.0925298889 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
13 Hb_001699_270 0.0942898932 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
14 Hb_007245_030 0.0943323116 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000060_030 0.0979968831 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
16 Hb_000038_070 0.0984636392 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005276_090 0.0993935117 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
18 Hb_001998_180 0.1007090221 - - actin binding protein, putative [Ricinus communis]
19 Hb_001279_110 0.1015347463 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
20 Hb_012395_040 0.1018728106 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_016898_020 Hb_016898_020 Hb_001307_150 Hb_001307_150 Hb_016898_020--Hb_001307_150 Hb_000856_390 Hb_000856_390 Hb_016898_020--Hb_000856_390 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_000480_060 Hb_000480_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_000317_120 Hb_000317_120 Hb_016898_020--Hb_000317_120 Hb_001307_150--Hb_000856_390 Hb_001307_150--Hb_000480_060 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_009113_060--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_009113_060--Hb_012395_040 Hb_001279_110 Hb_001279_110 Hb_009113_060--Hb_001279_110 Hb_009113_060--Hb_000480_060 Hb_000060_030 Hb_000060_030 Hb_009113_060--Hb_000060_030 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360 Hb_000116_050--Hb_000060_030 Hb_000116_050--Hb_012395_040 Hb_000116_050--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_000116_050--Hb_001998_180 Hb_002928_150 Hb_002928_150 Hb_000116_050--Hb_002928_150 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000317_120--Hb_000856_390 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0747423 0.348646 13.3739 8.32747 0.024144 0.0478499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.084088 0.907324 1.07708

CAGE analysis