Hb_000576_140

Information

Type -
Description -
Location Contig576: 332438-340505
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00880g
description POPTRDRAFT_737069; hypothetical protein
nr
ID XP_012077462.1
description PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07795 PE=4 SV=1
Gene Ontology
ID GO:0006342
description golgin subfamily a member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_140 0.0 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
2 Hb_000317_120 0.0837545433 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
3 Hb_000742_180 0.0860750342 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
4 Hb_000830_010 0.087946659 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003106_090 0.0904517893 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
6 Hb_016898_020 0.0909517825 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
7 Hb_005276_190 0.0957389926 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
8 Hb_000522_160 0.100019551 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_006810_040 0.1049551842 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_001454_270 0.1058589719 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
11 Hb_101133_050 0.1073417222 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
12 Hb_012150_040 0.1074087432 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002818_060 0.1094993682 - - zinc finger protein, putative [Ricinus communis]
14 Hb_005542_150 0.1101576857 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
15 Hb_000359_100 0.1106944063 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_390 0.1117358751 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000862_050 0.1118753618 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
18 Hb_005116_120 0.1118993937 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_002053_100 0.1122154253 - - actin binding protein, putative [Ricinus communis]
20 Hb_001348_100 0.1129981494 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]

Gene co-expression network

sample Hb_000576_140 Hb_000576_140 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000742_180 Hb_000742_180 Hb_000576_140--Hb_000742_180 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_016898_020 Hb_016898_020 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000856_390 Hb_000856_390 Hb_000317_120--Hb_000856_390 Hb_000317_120--Hb_016898_020 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000317_120--Hb_003106_090 Hb_000742_180--Hb_012150_040 Hb_007632_080 Hb_007632_080 Hb_000742_180--Hb_007632_080 Hb_101133_050 Hb_101133_050 Hb_000742_180--Hb_101133_050 Hb_000742_180--Hb_016898_020 Hb_033041_010 Hb_033041_010 Hb_000742_180--Hb_033041_010 Hb_001439_240 Hb_001439_240 Hb_000830_010--Hb_001439_240 Hb_002053_100 Hb_002053_100 Hb_000830_010--Hb_002053_100 Hb_000830_010--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_000830_010--Hb_000340_550 Hb_181744_010 Hb_181744_010 Hb_000830_010--Hb_181744_010 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_000085_360 Hb_000085_360 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_003106_090--Hb_000856_390 Hb_001307_150 Hb_001307_150 Hb_016898_020--Hb_001307_150 Hb_016898_020--Hb_000856_390 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_000480_060 Hb_000480_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_005276_190--Hb_002053_100 Hb_005276_190--Hb_001439_240 Hb_001349_050 Hb_001349_050 Hb_005276_190--Hb_001349_050 Hb_002203_010 Hb_002203_010 Hb_005276_190--Hb_002203_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0853431 0.483083 8.53063 5.68995 0.0598628 0.0146547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.053054 1.00569 1.30142

CAGE analysis