Hb_007632_080

Information

Type -
Description -
Location Contig7632: 64479-73423
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37690g
description POPTRDRAFT_753283; hypothetical protein
nr
ID XP_012070994.1
description PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L456
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01022 PE=4 SV=1
Gene Ontology
ID GO:0009791
description intracellular protein transport protein uso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57350: 69349-70898 , PASA_asmbl_57353: 72116-72347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_080 0.0 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
2 Hb_033041_010 0.0558020433 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
3 Hb_005183_150 0.0984727798 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
4 Hb_003109_010 0.1008449388 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
5 Hb_000028_530 0.1028214465 - - Protein regulator of cytokinesis, putative [Ricinus communis]
6 Hb_101133_050 0.1031802316 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
7 Hb_000334_120 0.1064565073 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
8 Hb_000576_140 0.113688465 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
9 Hb_001584_360 0.1142042125 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
10 Hb_000742_180 0.1144114958 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
11 Hb_004635_020 0.1147396792 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_005276_090 0.1151549959 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
13 Hb_002374_090 0.1171645345 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
14 Hb_001454_270 0.1175164596 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
15 Hb_001688_100 0.1175410884 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_012150_040 0.1196636526 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000265_100 0.1215382431 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
18 Hb_003106_090 0.122767781 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_000317_120 0.1231165455 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
20 Hb_005542_150 0.125572546 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_080 Hb_007632_080 Hb_033041_010 Hb_033041_010 Hb_007632_080--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_007632_080--Hb_005183_150 Hb_003109_010 Hb_003109_010 Hb_007632_080--Hb_003109_010 Hb_000028_530 Hb_000028_530 Hb_007632_080--Hb_000028_530 Hb_101133_050 Hb_101133_050 Hb_007632_080--Hb_101133_050 Hb_000334_120 Hb_000334_120 Hb_007632_080--Hb_000334_120 Hb_033041_010--Hb_000334_120 Hb_033041_010--Hb_005183_150 Hb_033041_010--Hb_101133_050 Hb_033041_010--Hb_000028_530 Hb_005276_090 Hb_005276_090 Hb_033041_010--Hb_005276_090 Hb_007632_210 Hb_007632_210 Hb_005183_150--Hb_007632_210 Hb_003360_010 Hb_003360_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_124677_050 Hb_124677_050 Hb_005183_150--Hb_124677_050 Hb_003109_010--Hb_033041_010 Hb_002232_310 Hb_002232_310 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_003109_010--Hb_101133_050 Hb_007943_180 Hb_007943_180 Hb_003109_010--Hb_007943_180 Hb_000028_530--Hb_000334_120 Hb_000265_100 Hb_000265_100 Hb_000028_530--Hb_000265_100 Hb_002374_090 Hb_002374_090 Hb_000028_530--Hb_002374_090 Hb_000189_350 Hb_000189_350 Hb_000028_530--Hb_000189_350 Hb_004963_020 Hb_004963_020 Hb_000028_530--Hb_004963_020 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_101133_050--Hb_005276_090 Hb_000334_120--Hb_001584_360 Hb_000334_120--Hb_000189_350 Hb_000334_120--Hb_000265_100 Hb_000334_120--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.016516 0.0671811 1.61277 0.753811 0.0247877 0.0110839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00934965 0 0.042464 0.230103 0.157959

CAGE analysis