Hb_000334_120

Information

Type -
Description -
Location Contig334: 109965-117312
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06380g
description POPTRDRAFT_557797; DNA topoisomerase family protein
nr
ID XP_012065591.1
description PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
swissprot
ID O24308
description DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1
trembl
ID A0A067LG15
description DNA topoisomerase 2 OS=Jatropha curcas GN=JCGZ_16782 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna topoisomerase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35026: 109820-109978 , PASA_asmbl_35027: 111912-117370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_120 0.0 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
2 Hb_000028_530 0.0685229943 - - Protein regulator of cytokinesis, putative [Ricinus communis]
3 Hb_033041_010 0.0718949806 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
4 Hb_001584_360 0.0900706539 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
5 Hb_000189_350 0.0910269149 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
6 Hb_000265_100 0.0990365306 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
7 Hb_005276_090 0.1022468603 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
8 Hb_002374_090 0.1045451552 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
9 Hb_007632_080 0.1064565073 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_002205_180 0.1070007071 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
11 Hb_001688_100 0.1073646793 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
12 Hb_101133_050 0.1110014852 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
13 Hb_000085_360 0.1141012959 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
14 Hb_006520_030 0.1147118337 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
15 Hb_005183_150 0.1169463095 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_007044_260 0.1175756582 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
17 Hb_080952_060 0.1194133451 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_119044_040 0.1196733337 - - cyclin B, putative [Ricinus communis]
19 Hb_004102_090 0.1202590158 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
20 Hb_000441_210 0.1215765861 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]

Gene co-expression network

sample Hb_000334_120 Hb_000334_120 Hb_000028_530 Hb_000028_530 Hb_000334_120--Hb_000028_530 Hb_033041_010 Hb_033041_010 Hb_000334_120--Hb_033041_010 Hb_001584_360 Hb_001584_360 Hb_000334_120--Hb_001584_360 Hb_000189_350 Hb_000189_350 Hb_000334_120--Hb_000189_350 Hb_000265_100 Hb_000265_100 Hb_000334_120--Hb_000265_100 Hb_005276_090 Hb_005276_090 Hb_000334_120--Hb_005276_090 Hb_000028_530--Hb_000265_100 Hb_002374_090 Hb_002374_090 Hb_000028_530--Hb_002374_090 Hb_000028_530--Hb_000189_350 Hb_000028_530--Hb_033041_010 Hb_004963_020 Hb_004963_020 Hb_000028_530--Hb_004963_020 Hb_007632_080 Hb_007632_080 Hb_033041_010--Hb_007632_080 Hb_005183_150 Hb_005183_150 Hb_033041_010--Hb_005183_150 Hb_101133_050 Hb_101133_050 Hb_033041_010--Hb_101133_050 Hb_033041_010--Hb_005276_090 Hb_001688_100 Hb_001688_100 Hb_001584_360--Hb_001688_100 Hb_001584_360--Hb_033041_010 Hb_001584_360--Hb_005183_150 Hb_001584_360--Hb_007632_080 Hb_001584_360--Hb_101133_050 Hb_033152_060 Hb_033152_060 Hb_000189_350--Hb_033152_060 Hb_002205_180 Hb_002205_180 Hb_000189_350--Hb_002205_180 Hb_000316_070 Hb_000316_070 Hb_000189_350--Hb_000316_070 Hb_027905_040 Hb_027905_040 Hb_000189_350--Hb_027905_040 Hb_011849_010 Hb_011849_010 Hb_000189_350--Hb_011849_010 Hb_010705_040 Hb_010705_040 Hb_000265_100--Hb_010705_040 Hb_000265_100--Hb_002374_090 Hb_000265_100--Hb_004963_020 Hb_002473_030 Hb_002473_030 Hb_000265_100--Hb_002473_030 Hb_000085_360 Hb_000085_360 Hb_005276_090--Hb_000085_360 Hb_000480_060 Hb_000480_060 Hb_005276_090--Hb_000480_060 Hb_003106_090 Hb_003106_090 Hb_005276_090--Hb_003106_090 Hb_119044_040 Hb_119044_040 Hb_005276_090--Hb_119044_040 Hb_005276_090--Hb_002374_090 Hb_003776_050 Hb_003776_050 Hb_005276_090--Hb_003776_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192864 0.35905 15.9324 5.56734 0.0511364 0.0675785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128474 0.209438 0.208433 2.23546 0.961434

CAGE analysis