Hb_033152_060

Information

Type -
Description -
Location Contig33152: 49247-56628
Sequence    

Annotation

kegg
ID rcu:RCOM_0773970
description ATP binding protein, putative
nr
ID XP_012072464.1
description PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
swissprot
ID Q27IK6
description Phragmoplast orienting kinesin 2 OS=Arabidopsis thaliana GN=POK2 PE=2 SV=1
trembl
ID A0A067KPZ0
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_04889 PE=3 SV=1
Gene Ontology
ID GO:0005871
description phragmoplast orienting kinesin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34843: 49825-49939 , PASA_asmbl_34844: 50588-51288 , PASA_asmbl_34845: 51509-51912 , PASA_asmbl_34846: 53185-54010 , PASA_asmbl_34847: 54780-55289 , PASA_asmbl_34850: 56265-56461 , PASA_asmbl_34851: 56500-57083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_060 0.0 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
2 Hb_000189_350 0.0771216013 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
3 Hb_001864_040 0.0933407272 - - PREDICTED: kinesin-1 [Jatropha curcas]
4 Hb_000316_070 0.0950156314 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
5 Hb_002205_180 0.102123978 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
6 Hb_027905_040 0.1038663971 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
7 Hb_004635_020 0.1054375084 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
8 Hb_000038_070 0.1076206531 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011849_010 0.1137366906 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
10 Hb_004102_090 0.1158976984 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
11 Hb_000028_530 0.1202908867 - - Protein regulator of cytokinesis, putative [Ricinus communis]
12 Hb_012753_150 0.1206642419 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
13 Hb_039812_010 0.1214676504 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
14 Hb_002918_220 0.1216931609 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
15 Hb_000416_080 0.1223457728 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
16 Hb_002374_090 0.1225448209 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
17 Hb_000856_390 0.1230666119 - - conserved hypothetical protein [Ricinus communis]
18 Hb_101133_050 0.1247089394 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
19 Hb_000085_360 0.1261052305 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
20 Hb_004963_020 0.1261762914 - - PREDICTED: patellin-4 [Populus euphratica]

Gene co-expression network

sample Hb_033152_060 Hb_033152_060 Hb_000189_350 Hb_000189_350 Hb_033152_060--Hb_000189_350 Hb_001864_040 Hb_001864_040 Hb_033152_060--Hb_001864_040 Hb_000316_070 Hb_000316_070 Hb_033152_060--Hb_000316_070 Hb_002205_180 Hb_002205_180 Hb_033152_060--Hb_002205_180 Hb_027905_040 Hb_027905_040 Hb_033152_060--Hb_027905_040 Hb_004635_020 Hb_004635_020 Hb_033152_060--Hb_004635_020 Hb_000189_350--Hb_002205_180 Hb_000189_350--Hb_000316_070 Hb_000189_350--Hb_027905_040 Hb_011849_010 Hb_011849_010 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530 Hb_004963_020 Hb_004963_020 Hb_001864_040--Hb_004963_020 Hb_001864_040--Hb_000316_070 Hb_007558_110 Hb_007558_110 Hb_001864_040--Hb_007558_110 Hb_002473_030 Hb_002473_030 Hb_001864_040--Hb_002473_030 Hb_001864_040--Hb_004635_020 Hb_000316_070--Hb_011849_010 Hb_000316_070--Hb_004635_020 Hb_000316_070--Hb_004963_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_007245_030 Hb_007245_030 Hb_000316_070--Hb_007245_030 Hb_004102_090 Hb_004102_090 Hb_002205_180--Hb_004102_090 Hb_000441_210 Hb_000441_210 Hb_002205_180--Hb_000441_210 Hb_010705_040 Hb_010705_040 Hb_002205_180--Hb_010705_040 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_002686_070 Hb_002686_070 Hb_027905_040--Hb_002686_070 Hb_027905_040--Hb_000316_070 Hb_027905_040--Hb_000614_200 Hb_027905_040--Hb_011849_010 Hb_064396_010 Hb_064396_010 Hb_027905_040--Hb_064396_010 Hb_000856_390 Hb_000856_390 Hb_004635_020--Hb_000856_390 Hb_000085_360 Hb_000085_360 Hb_004635_020--Hb_000085_360 Hb_080952_060 Hb_080952_060 Hb_004635_020--Hb_080952_060 Hb_119044_040 Hb_119044_040 Hb_004635_020--Hb_119044_040 Hb_004635_020--Hb_007245_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139445 0.331847 4.99556 2.00896 0 0.0241386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0511306 0.0241431 0 0.382411 0.276133

CAGE analysis