Hb_000441_210

Information

Type -
Description -
Location Contig441: 272427-276470
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46970g
description POPTRDRAFT_844305; hypothetical protein
nr
ID XP_012075600.1
description PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
swissprot
ID Q9SUC3
description Protein POLLENLESS 3 OS=Arabidopsis thaliana GN=MS5 PE=2 SV=2
trembl
ID A0A067KFB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09209 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42647: 274966-275136 , PASA_asmbl_42648: 274853-275634 , PASA_asmbl_42649: 276000-276634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_210 0.0 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
2 Hb_004963_020 0.0907352782 - - PREDICTED: patellin-4 [Populus euphratica]
3 Hb_004102_090 0.0914426682 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
4 Hb_010705_040 0.0944034118 - - PREDICTED: kinesin-4 [Jatropha curcas]
5 Hb_001454_180 0.094639493 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
6 Hb_002205_180 0.0947488987 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
7 Hb_001168_030 0.0990493642 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
8 Hb_001864_040 0.1080350255 - - PREDICTED: kinesin-1 [Jatropha curcas]
9 Hb_000028_530 0.109241711 - - Protein regulator of cytokinesis, putative [Ricinus communis]
10 Hb_080952_060 0.1096817852 - - PREDICTED: patellin-4 [Populus euphratica]
11 Hb_003813_110 0.1117734308 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001699_070 0.114643413 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000189_350 0.1148320545 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
14 Hb_004619_090 0.1158389116 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004032_390 0.1171900731 - - CDK, putative [Ricinus communis]
16 Hb_000316_070 0.1174738846 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
17 Hb_000364_140 0.1178637391 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
18 Hb_002473_030 0.1193226906 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
19 Hb_000334_120 0.1215765861 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
20 Hb_004635_020 0.12263099 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_000441_210 Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_000441_210--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_000441_210--Hb_004102_090 Hb_010705_040 Hb_010705_040 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_002205_180 Hb_002205_180 Hb_000441_210--Hb_002205_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030 Hb_002473_030 Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_004102_090--Hb_002205_180 Hb_004102_090--Hb_004963_020 Hb_004102_090--Hb_000316_070 Hb_006520_030 Hb_006520_030 Hb_004102_090--Hb_006520_030 Hb_000189_350 Hb_000189_350 Hb_004102_090--Hb_000189_350 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_010705_040--Hb_004963_020 Hb_010705_040--Hb_004102_090 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_001454_180--Hb_004963_020 Hb_010021_060 Hb_010021_060 Hb_001454_180--Hb_010021_060 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_007558_110 Hb_007558_110 Hb_001454_180--Hb_007558_110 Hb_001454_180--Hb_002473_030 Hb_002205_180--Hb_000189_350 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_007245_030 Hb_007245_030 Hb_001168_030--Hb_007245_030 Hb_001168_030--Hb_000316_070 Hb_005914_100 Hb_005914_100 Hb_001168_030--Hb_005914_100 Hb_000614_200 Hb_000614_200 Hb_001168_030--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_001168_030--Hb_003776_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0897185 0.0938315 5.27885 2.06976 0.0299484 0.0462233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0453126 0.0891331 0.0338017 0.290791 0.113011

CAGE analysis