Hb_006520_030

Information

Type -
Description -
Location Contig6520: 46562-52645
Sequence    

Annotation

kegg
ID rcu:RCOM_0409820
description ATP binding protein, putative
nr
ID XP_012081704.1
description PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067K444
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_18733 PE=3 SV=1
Gene Ontology
ID GO:0005871
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52582: 50529-51875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006520_030 0.0 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
2 Hb_011849_010 0.0776794381 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
3 Hb_001998_180 0.0829428452 - - actin binding protein, putative [Ricinus communis]
4 Hb_003776_050 0.0849249252 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
5 Hb_080952_060 0.0861162956 - - PREDICTED: patellin-4 [Populus euphratica]
6 Hb_001969_120 0.0876863145 - - PREDICTED: plectin [Jatropha curcas]
7 Hb_003777_260 0.091829505 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
8 Hb_001279_110 0.09212668 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
9 Hb_000060_030 0.0928257962 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
10 Hb_004102_090 0.0932004805 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
11 Hb_000085_360 0.094690737 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_005618_070 0.0956869701 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
13 Hb_119044_040 0.0957182735 - - cyclin B, putative [Ricinus communis]
14 Hb_004032_390 0.0972084638 - - CDK, putative [Ricinus communis]
15 Hb_008725_240 0.0988066744 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005276_090 0.0988288159 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
17 Hb_002205_180 0.0994596793 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
18 Hb_005116_120 0.0999593823 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_002374_090 0.1010861982 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
20 Hb_002928_150 0.1011126364 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_006520_030 Hb_006520_030 Hb_011849_010 Hb_011849_010 Hb_006520_030--Hb_011849_010 Hb_001998_180 Hb_001998_180 Hb_006520_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_006520_030--Hb_003776_050 Hb_080952_060 Hb_080952_060 Hb_006520_030--Hb_080952_060 Hb_001969_120 Hb_001969_120 Hb_006520_030--Hb_001969_120 Hb_003777_260 Hb_003777_260 Hb_006520_030--Hb_003777_260 Hb_000614_200 Hb_000614_200 Hb_011849_010--Hb_000614_200 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_119044_040 Hb_119044_040 Hb_011849_010--Hb_119044_040 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070 Hb_000060_030 Hb_000060_030 Hb_001998_180--Hb_000060_030 Hb_001998_180--Hb_080952_060 Hb_000116_050 Hb_000116_050 Hb_001998_180--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_001998_180--Hb_001279_110 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_003776_050--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_003776_050--Hb_000060_030 Hb_080952_060--Hb_003776_050 Hb_080952_060--Hb_119044_040 Hb_080952_060--Hb_000085_360 Hb_080952_060--Hb_001279_110 Hb_080952_060--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_001969_120--Hb_005618_070 Hb_001969_120--Hb_003398_050 Hb_001969_120--Hb_001279_110 Hb_001969_120--Hb_119044_040 Hb_001969_120--Hb_002928_150 Hb_000340_550 Hb_000340_550 Hb_003777_260--Hb_000340_550 Hb_005116_120 Hb_005116_120 Hb_003777_260--Hb_005116_120 Hb_181744_010 Hb_181744_010 Hb_003777_260--Hb_181744_010 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_001439_240 Hb_001439_240 Hb_003777_260--Hb_001439_240 Hb_005288_090 Hb_005288_090 Hb_003777_260--Hb_005288_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118672 0.0507841 4.63569 1.6801 0.00555258 0.0109491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0846823 0 0.390295 0.361809

CAGE analysis