Hb_005116_120

Information

Type -
Description -
Location Contig5116: 139045-140842
Sequence    

Annotation

kegg
ID rcu:RCOM_0557930
description hypothetical protein
nr
ID XP_012092248.1
description PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21933 PE=4 SV=1
Gene Ontology
ID GO:1902589
description f-box wd repeat-containing 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46353: 139040-140661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_120 0.0 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
2 Hb_003777_260 0.0573966455 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
3 Hb_181744_010 0.0692114524 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_000340_550 0.0718203504 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
5 Hb_005288_090 0.0894333175 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
6 Hb_001998_180 0.0905592884 - - actin binding protein, putative [Ricinus communis]
7 Hb_001279_110 0.0906750491 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
8 Hb_012395_040 0.0908204751 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000060_030 0.0934062318 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
10 Hb_000116_050 0.0934700006 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
11 Hb_003902_070 0.0971137663 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005618_070 0.0983171146 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
13 Hb_000085_360 0.0987016516 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
14 Hb_001541_140 0.0987643007 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
15 Hb_001969_120 0.0998764075 - - PREDICTED: plectin [Jatropha curcas]
16 Hb_006520_030 0.0999593823 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
17 Hb_002053_100 0.1000101131 - - actin binding protein, putative [Ricinus communis]
18 Hb_002757_010 0.1007279187 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
19 Hb_000261_550 0.1015493789 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
20 Hb_001454_270 0.1016010934 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_120 Hb_005116_120 Hb_003777_260 Hb_003777_260 Hb_005116_120--Hb_003777_260 Hb_181744_010 Hb_181744_010 Hb_005116_120--Hb_181744_010 Hb_000340_550 Hb_000340_550 Hb_005116_120--Hb_000340_550 Hb_005288_090 Hb_005288_090 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_001279_110 Hb_001279_110 Hb_005116_120--Hb_001279_110 Hb_003777_260--Hb_000340_550 Hb_003777_260--Hb_181744_010 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_001439_240 Hb_001439_240 Hb_003777_260--Hb_001439_240 Hb_003777_260--Hb_005288_090 Hb_181744_010--Hb_000340_550 Hb_181744_010--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_000038_070 Hb_000038_070 Hb_181744_010--Hb_000038_070 Hb_000340_550--Hb_001439_240 Hb_000340_550--Hb_005288_090 Hb_002053_100 Hb_002053_100 Hb_000340_550--Hb_002053_100 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_001257_070 Hb_001257_070 Hb_005288_090--Hb_001257_070 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050 Hb_001998_180--Hb_000060_030 Hb_080952_060 Hb_080952_060 Hb_001998_180--Hb_080952_060 Hb_001998_180--Hb_000116_050 Hb_001998_180--Hb_001279_110 Hb_003776_050 Hb_003776_050 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_001279_110--Hb_000060_030 Hb_001279_110--Hb_000116_050 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_001279_110--Hb_002928_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525634 0.343911 31.2027 14.7637 0.0328303 0.0337242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0629485 0.0585852 3.07575 4.56257

CAGE analysis