Hb_000340_550

Information

Type -
Description -
Location Contig340: 464216-466953
Sequence    

Annotation

kegg
ID rcu:RCOM_0556890
description gtpase activating protein, putative
nr
ID XP_012092348.1
description PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
swissprot
ID F4JI46
description Rho GTPase-activating protein 2 OS=Arabidopsis thaliana GN=ROPGAP2 PE=1 SV=1
trembl
ID A0A067JPU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22015 PE=4 SV=1
Gene Ontology
ID GO:0000226
description rho gtpase-activating protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35599: 464097-466444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_550 0.0 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
2 Hb_003777_260 0.0533908882 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
3 Hb_001439_240 0.0592013271 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
4 Hb_181744_010 0.0600416512 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_005288_090 0.0656941461 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
6 Hb_002053_100 0.06995677 - - actin binding protein, putative [Ricinus communis]
7 Hb_005116_120 0.0718203504 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
8 Hb_000830_010 0.0749476188 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012395_040 0.0794474654 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001541_140 0.0795326463 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
11 Hb_000116_050 0.0831289862 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
12 Hb_000060_030 0.0833806383 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
13 Hb_001279_110 0.0834923711 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
14 Hb_001998_180 0.0848951913 - - actin binding protein, putative [Ricinus communis]
15 Hb_005618_070 0.0869521059 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
16 Hb_011849_010 0.0879000802 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
17 Hb_001969_120 0.0929651776 - - PREDICTED: plectin [Jatropha curcas]
18 Hb_000038_070 0.0939444637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000416_080 0.0962857242 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
20 Hb_003776_050 0.0973507929 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_550 Hb_000340_550 Hb_003777_260 Hb_003777_260 Hb_000340_550--Hb_003777_260 Hb_001439_240 Hb_001439_240 Hb_000340_550--Hb_001439_240 Hb_181744_010 Hb_181744_010 Hb_000340_550--Hb_181744_010 Hb_005288_090 Hb_005288_090 Hb_000340_550--Hb_005288_090 Hb_002053_100 Hb_002053_100 Hb_000340_550--Hb_002053_100 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_003777_260--Hb_005116_120 Hb_003777_260--Hb_181744_010 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_003777_260--Hb_001439_240 Hb_003777_260--Hb_005288_090 Hb_001439_240--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_001439_240--Hb_000830_010 Hb_001439_240--Hb_181744_010 Hb_005276_190 Hb_005276_190 Hb_001439_240--Hb_005276_190 Hb_001279_110 Hb_001279_110 Hb_181744_010--Hb_001279_110 Hb_181744_010--Hb_005116_120 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_000038_070 Hb_000038_070 Hb_181744_010--Hb_000038_070 Hb_012395_040 Hb_012395_040 Hb_005288_090--Hb_012395_040 Hb_001257_070 Hb_001257_070 Hb_005288_090--Hb_001257_070 Hb_005288_090--Hb_000060_030 Hb_005618_070 Hb_005618_070 Hb_005288_090--Hb_005618_070 Hb_000116_050 Hb_000116_050 Hb_005288_090--Hb_000116_050 Hb_002053_100--Hb_000830_010 Hb_002053_100--Hb_005276_190 Hb_001349_050 Hb_001349_050 Hb_002053_100--Hb_001349_050 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_005116_120--Hb_001279_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0280289 0.540367 20.4877 8.66895 0.0117053 0.0452231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21404 2.53733

CAGE analysis