Hb_000830_010

Information

Type -
Description -
Location Contig830: 42070-45593
Sequence    

Annotation

kegg
ID rcu:RCOM_0945790
description hypothetical protein
nr
ID XP_002514469.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RL50
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0945790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59799: 41735-43780 , PASA_asmbl_59803: 45345-45700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000830_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001439_240 0.0590853011 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
3 Hb_002053_100 0.060354763 - - actin binding protein, putative [Ricinus communis]
4 Hb_005276_190 0.064639136 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
5 Hb_000340_550 0.0749476188 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
6 Hb_000576_140 0.087946659 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
7 Hb_181744_010 0.0916142987 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_003777_260 0.0941951545 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
9 Hb_002203_010 0.0955894287 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
10 Hb_000038_070 0.0973505074 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002918_220 0.1032676623 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
12 Hb_005116_120 0.1040429382 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
13 Hb_016898_020 0.1046980886 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
14 Hb_001571_080 0.1057847176 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
15 Hb_001541_140 0.1065209425 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
16 Hb_001349_050 0.1075209549 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
17 Hb_001085_160 0.11084857 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
18 Hb_003106_090 0.111214511 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_000317_120 0.1121441779 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
20 Hb_000213_020 0.1129719597 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000830_010 Hb_000830_010 Hb_001439_240 Hb_001439_240 Hb_000830_010--Hb_001439_240 Hb_002053_100 Hb_002053_100 Hb_000830_010--Hb_002053_100 Hb_005276_190 Hb_005276_190 Hb_000830_010--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_000830_010--Hb_000340_550 Hb_000576_140 Hb_000576_140 Hb_000830_010--Hb_000576_140 Hb_181744_010 Hb_181744_010 Hb_000830_010--Hb_181744_010 Hb_001439_240--Hb_002053_100 Hb_001439_240--Hb_000340_550 Hb_001439_240--Hb_181744_010 Hb_001439_240--Hb_005276_190 Hb_003777_260 Hb_003777_260 Hb_001439_240--Hb_003777_260 Hb_002053_100--Hb_005276_190 Hb_002053_100--Hb_000340_550 Hb_001349_050 Hb_001349_050 Hb_002053_100--Hb_001349_050 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310 Hb_005276_190--Hb_001349_050 Hb_005276_190--Hb_000576_140 Hb_002203_010 Hb_002203_010 Hb_005276_190--Hb_002203_010 Hb_000340_550--Hb_003777_260 Hb_000340_550--Hb_181744_010 Hb_005288_090 Hb_005288_090 Hb_000340_550--Hb_005288_090 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000742_180 Hb_000742_180 Hb_000576_140--Hb_000742_180 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_016898_020 Hb_016898_020 Hb_000576_140--Hb_016898_020 Hb_001279_110 Hb_001279_110 Hb_181744_010--Hb_001279_110 Hb_181744_010--Hb_005116_120 Hb_181744_010--Hb_003777_260 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_000038_070 Hb_000038_070 Hb_181744_010--Hb_000038_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0197436 0.374 6.58088 3.64522 0 0.00771178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0200249 0 0 0.463437 1.00199

CAGE analysis