Hb_000742_180

Information

Type -
Description -
Location Contig742: 167779-173595
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16640g
description hypothetical protein
nr
ID XP_006377952.1
description hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
swissprot
ID Q9SUC3
description Protein POLLENLESS 3 OS=Arabidopsis thaliana GN=MS5 PE=2 SV=2
trembl
ID U5G034
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s16640g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56500: 169761-171754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_180 0.0 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
2 Hb_000576_140 0.0860750342 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
3 Hb_012150_040 0.1002093397 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007632_080 0.1144114958 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
5 Hb_101133_050 0.1151857641 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
6 Hb_016898_020 0.1159967744 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
7 Hb_033041_010 0.117570539 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
8 Hb_003106_090 0.1183292898 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
9 Hb_000479_020 0.1194613385 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000317_120 0.1217990282 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
11 Hb_004635_020 0.1229729176 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_005542_150 0.1273128303 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
13 Hb_000856_390 0.1286651996 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003109_010 0.1299528032 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
15 Hb_003813_090 0.1310710912 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
16 Hb_000038_070 0.1318163031 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001307_150 0.1333581886 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000661_150 0.1343483317 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_005276_090 0.1345509631 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_001454_270 0.1360400717 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_180 Hb_000742_180 Hb_000576_140 Hb_000576_140 Hb_000742_180--Hb_000576_140 Hb_012150_040 Hb_012150_040 Hb_000742_180--Hb_012150_040 Hb_007632_080 Hb_007632_080 Hb_000742_180--Hb_007632_080 Hb_101133_050 Hb_101133_050 Hb_000742_180--Hb_101133_050 Hb_016898_020 Hb_016898_020 Hb_000742_180--Hb_016898_020 Hb_033041_010 Hb_033041_010 Hb_000742_180--Hb_033041_010 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190 Hb_012150_040--Hb_000317_120 Hb_001377_370 Hb_001377_370 Hb_012150_040--Hb_001377_370 Hb_012150_040--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_012150_040--Hb_000661_150 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_007632_080--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_007632_080--Hb_005183_150 Hb_003109_010 Hb_003109_010 Hb_007632_080--Hb_003109_010 Hb_000028_530 Hb_000028_530 Hb_007632_080--Hb_000028_530 Hb_007632_080--Hb_101133_050 Hb_000334_120 Hb_000334_120 Hb_007632_080--Hb_000334_120 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_101133_050--Hb_016898_020 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_016898_020--Hb_001307_150 Hb_000856_390 Hb_000856_390 Hb_016898_020--Hb_000856_390 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_000480_060 Hb_000480_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_016898_020--Hb_000317_120 Hb_033041_010--Hb_000334_120 Hb_033041_010--Hb_005183_150 Hb_033041_010--Hb_101133_050 Hb_033041_010--Hb_000028_530 Hb_033041_010--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0995983 0.165896 4.02972 2.43155 0.126643 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0158975 0.0302237 0.410739 0.471674

CAGE analysis