Hb_012150_040

Information

Type -
Description -
Location Contig12150: 35357-38958
Sequence    

Annotation

kegg
ID rcu:RCOM_1382590
description hypothetical protein
nr
ID XP_002522091.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7X5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06579: 36203-37035 , PASA_asmbl_06583: 38338-39156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012150_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000317_120 0.0835343087 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
3 Hb_001377_370 0.0915475743 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
4 Hb_101133_050 0.0971497473 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
5 Hb_000661_150 0.0987700767 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
6 Hb_000742_180 0.1002093397 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
7 Hb_072201_010 0.1023188477 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
8 Hb_001950_090 0.1069123081 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
9 Hb_000576_140 0.1074087432 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
10 Hb_002311_090 0.1090168494 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
11 Hb_016898_020 0.1099714619 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
12 Hb_000856_390 0.1115246765 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000069_650 0.1125842758 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007474_020 0.1165016355 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_001307_150 0.1176868028 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_007632_080 0.1196636526 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
17 Hb_001699_270 0.1221551575 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
18 Hb_003106_090 0.1230481642 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_004635_020 0.1233058776 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
20 Hb_003813_110 0.1279172461 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012150_040 Hb_012150_040 Hb_000317_120 Hb_000317_120 Hb_012150_040--Hb_000317_120 Hb_001377_370 Hb_001377_370 Hb_012150_040--Hb_001377_370 Hb_101133_050 Hb_101133_050 Hb_012150_040--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_012150_040--Hb_000661_150 Hb_000742_180 Hb_000742_180 Hb_012150_040--Hb_000742_180 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000856_390 Hb_000856_390 Hb_000317_120--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_000317_120--Hb_016898_020 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090 Hb_000069_650 Hb_000069_650 Hb_001377_370--Hb_000069_650 Hb_001377_370--Hb_001950_090 Hb_000289_020 Hb_000289_020 Hb_001377_370--Hb_000289_020 Hb_002028_270 Hb_002028_270 Hb_001377_370--Hb_002028_270 Hb_001377_370--Hb_000317_120 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_101133_050--Hb_016898_020 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_000661_150--Hb_001307_150 Hb_000742_180--Hb_000576_140 Hb_007632_080 Hb_007632_080 Hb_000742_180--Hb_007632_080 Hb_000742_180--Hb_101133_050 Hb_000742_180--Hb_016898_020 Hb_033041_010 Hb_033041_010 Hb_000742_180--Hb_033041_010 Hb_072201_010--Hb_000069_650 Hb_003847_060 Hb_003847_060 Hb_072201_010--Hb_003847_060 Hb_072201_010--Hb_001950_090 Hb_021576_050 Hb_021576_050 Hb_072201_010--Hb_021576_050 Hb_072201_010--Hb_000317_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164699 0.564174 8.10069 5.73621 0.153685 0.075847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.065261 0.0128385 0.0735328 0.774531 0.574004

CAGE analysis