Hb_000289_020

Information

Type -
Description -
Location Contig289: 64494-68588
Sequence    

Annotation

kegg
ID cit:102625973
description uncharacterized LOC102625973
nr
ID XP_006451702.1
description hypothetical protein CICLE_v10009323mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UFS3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009323mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_020 0.0 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
2 Hb_006120_130 0.0860510006 - - -
3 Hb_002028_270 0.0894422754 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_000098_270 0.0931140202 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
5 Hb_005211_170 0.0996830395 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
6 Hb_043552_010 0.1079804429 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
7 Hb_003464_010 0.1117460165 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000270_050 0.1118652979 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
9 Hb_001377_370 0.1122455116 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_177195_010 0.1135730927 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
11 Hb_000933_040 0.1158133406 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_002307_150 0.1172032058 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
13 Hb_003489_010 0.117433023 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
14 Hb_000310_040 0.1194320937 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
15 Hb_001971_040 0.1200988082 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
16 Hb_006810_040 0.1212670995 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_089140_070 0.1242251297 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
18 Hb_001329_050 0.1244885426 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000878_080 0.1268618785 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
20 Hb_000375_260 0.1298359982 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]

Gene co-expression network

sample Hb_000289_020 Hb_000289_020 Hb_006120_130 Hb_006120_130 Hb_000289_020--Hb_006120_130 Hb_002028_270 Hb_002028_270 Hb_000289_020--Hb_002028_270 Hb_000098_270 Hb_000098_270 Hb_000289_020--Hb_000098_270 Hb_005211_170 Hb_005211_170 Hb_000289_020--Hb_005211_170 Hb_043552_010 Hb_043552_010 Hb_000289_020--Hb_043552_010 Hb_003464_010 Hb_003464_010 Hb_000289_020--Hb_003464_010 Hb_000375_260 Hb_000375_260 Hb_006120_130--Hb_000375_260 Hb_000862_050 Hb_000862_050 Hb_006120_130--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_006120_130--Hb_008725_100 Hb_006120_130--Hb_043552_010 Hb_006120_130--Hb_002028_270 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_006351_030 Hb_006351_030 Hb_000098_270--Hb_006351_030 Hb_000098_270--Hb_008725_100 Hb_000098_270--Hb_006810_040 Hb_010672_010 Hb_010672_010 Hb_000098_270--Hb_010672_010 Hb_000098_270--Hb_043552_010 Hb_002307_150 Hb_002307_150 Hb_005211_170--Hb_002307_150 Hb_000333_140 Hb_000333_140 Hb_005211_170--Hb_000333_140 Hb_010080_050 Hb_010080_050 Hb_005211_170--Hb_010080_050 Hb_000445_260 Hb_000445_260 Hb_005211_170--Hb_000445_260 Hb_000310_040 Hb_000310_040 Hb_005211_170--Hb_000310_040 Hb_011628_010 Hb_011628_010 Hb_005211_170--Hb_011628_010 Hb_009252_080 Hb_009252_080 Hb_043552_010--Hb_009252_080 Hb_001709_090 Hb_001709_090 Hb_043552_010--Hb_001709_090 Hb_043552_010--Hb_000375_260 Hb_000162_190 Hb_000162_190 Hb_043552_010--Hb_000162_190 Hb_043552_010--Hb_000310_040 Hb_003992_020 Hb_003992_020 Hb_043552_010--Hb_003992_020 Hb_012092_040 Hb_012092_040 Hb_003464_010--Hb_012092_040 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_003464_010--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_003464_010--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_003464_010--Hb_000035_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0343005 0.283553 1.66922 2.09442 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151848 0.123337

CAGE analysis